Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1104 143 5e-29 seq6695 122 2e-22 >seq1104 Length=4098138 Score = 143 bits (158), Expect = 5e-29 Identities = 495/761 (65%), Gaps = 32/761 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || ||||| || ||||| |||||||||| || |||||| || Sbjct 1191069 CTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTC 1191128 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||| | || || || | | |||||| || | ||| | | |||||| Sbjct 1191129 CATCCAATCAAATGGATTCGTTACACCGTACACCT-TGCCGCACCCGAGCGCACCCAGCA 1191187 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 ||||||| ||| |||||||||||| ||| ||| ||||||||| | | Sbjct 1191188 ACCGATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCA--- 1191244 Query 48018 ACACGGGCA---AAGCCTTTGTGAGA--AACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||| |||| | ||| |||||| |||| || | || || || | ||| Sbjct 1191245 --ACGCGCATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCAC 1191302 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | ||||| | ||| | || ||||| | ||| Sbjct 1191303 GATTGACTTCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTG---TAGAGGAGGCA 1191359 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || || || | ||| | ||||||||| || ||| | | |||| ||||| | || Sbjct 1191360 CGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCC 1191419 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||| ||||| || || || ||| ||| ||||||||||| Sbjct 1191420 CGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGAT 1191479 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT----CTTGTCTG 48308 || || || ||||| ||| |||| ||||| |||| || | | ||| Sbjct 1191480 CCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTCTGAGACCCGTC-- 1191533 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||| | ||||||||| || ||| || || ||||| ||||| | Sbjct 1191534 -GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGC 1191592 Query 48369 GGAAGAGCTTCTTGCACTCACCT--GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 | || || | | | ||| ||| |||||| | ||||| ||| || ||| Sbjct 1191593 GAAAAAGGTGGT--CTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTA 1191650 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| || || | ||||| || ||||||||||| |||||||| || | ||||| Sbjct 1191651 CATCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGC 1191710 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545 ||||| || || | ||| | ||| || ||||| || || || || || | Sbjct 1191711 GACCTGAACATCGGACATGAA-CCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGG 1191769 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCG 48586 | |||||||| || |||||||| | | ||| || || ||| Sbjct 1191770 CGGCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCG 1191810 >seq6695 Length=6602074 Score = 122 bits (134), Expect = 2e-22 Identities = 251/372 (67%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || || || | ||| | ||||||||| || ||| | |||| ||||| | Sbjct 4468748 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAAT 4468689 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||||| || ||| ||||| ||||| || |||| ||| ||||||||| Sbjct 4468688 CCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAG 4468629 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT----CTTGTC 48306 || || || || ||||| ||| |||| ||||| |||| || || | ||| Sbjct 4468628 ATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTTTGAGACCCGTC 4468573 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | ||||| | ||||||||| || ||| || | ||||| ||||| Sbjct 4468572 ---GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 || ||||| | | | ||| || ||| | |||||| ||| || ||| Sbjct 4468515 ACGAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTA 4468456 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | |||||| || |||||||| || ||||||||||| | ||||| | Sbjct 4468455 CATCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGA 4468396 Query 48487 CACCTGCACTTC 48498 ||||| || || Sbjct 4468395 GACCTGGACATC 4468384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931390170684160