Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 143 5e-29
seq6695 122 2e-22
>seq1104
Length=4098138
Score = 143 bits (158), Expect = 5e-29
Identities = 495/761 (65%), Gaps = 32/761 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || || ||||| || ||||| |||||||||| || |||||| ||
Sbjct 1191069 CTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTC 1191128
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957
||| | || || || | | |||||| || | ||| | | ||||||
Sbjct 1191129 CATCCAATCAAATGGATTCGTTACACCGTACACCT-TGCCGCACCCGAGCGCACCCAGCA 1191187
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
||||||| ||| |||||||||||| ||| ||| ||||||||| | |
Sbjct 1191188 ACCGATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCA--- 1191244
Query 48018 ACACGGGCA---AAGCCTTTGTGAGA--AACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
||| ||| |||| | ||| |||||| |||| || | || || || | |||
Sbjct 1191245 --ACGCGCATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCAC 1191302
Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132
|| ||| ||||| ||| | | | ||||| | ||| | || ||||| | |||
Sbjct 1191303 GATTGACTTCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTG---TAGAGGAGGCA 1191359
Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192
|| || || | ||| | ||||||||| || ||| | | |||| ||||| | ||
Sbjct 1191360 CGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCC 1191419
Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252
||||| | ||| | || ||| ||||| || || || ||| ||| |||||||||||
Sbjct 1191420 CGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGAT 1191479
Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT----CTTGTCTG 48308
|| || || ||||| ||| |||| ||||| |||| || | | |||
Sbjct 1191480 CCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTCTGAGACCCGTC-- 1191533
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368
|||||| | |||||| | ||||||||| || ||| || || ||||| ||||| |
Sbjct 1191534 -GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGC 1191592
Query 48369 GGAAGAGCTTCTTGCACTCACCT--GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426
| || || | | | ||| ||| |||||| | ||||| ||| || |||
Sbjct 1191593 GAAAAAGGTGGT--CTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTA 1191650
Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486
|||||| || || | ||||| || ||||||||||| |||||||| || | |||||
Sbjct 1191651 CATCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGC 1191710
Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545
||||| || || | ||| | ||| || ||||| || || || || || |
Sbjct 1191711 GACCTGAACATCGGACATGAA-CCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGG 1191769
Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCG 48586
| |||||||| || |||||||| | | ||| || || |||
Sbjct 1191770 CGGCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCG 1191810
>seq6695
Length=6602074
Score = 122 bits (134), Expect = 2e-22
Identities = 251/372 (67%), Gaps = 11/372 (3%)
Strand=Plus/Minus
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|| || || || | ||| | ||||||||| || ||| | |||| ||||| |
Sbjct 4468748 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAAT 4468689
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|| ||||| | ||||| || ||| ||||| ||||| || |||| ||| |||||||||
Sbjct 4468688 CCCGGCATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAG 4468629
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT----CTTGTC 48306
|| || || || ||||| ||| |||| ||||| |||| || || | |||
Sbjct 4468628 ATCCCTTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA----GCTTTGAGACCCGTC 4468573
Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366
|||||| | ||||| | ||||||||| || ||| || | ||||| |||||
Sbjct 4468572 ---GATCCATTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516
Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426
|| ||||| | | | ||| || ||| | |||||| ||| || |||
Sbjct 4468515 ACGAAAGAGGTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTA 4468456
Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486
|||||| ||||| | |||||| || |||||||| || ||||||||||| | ||||| |
Sbjct 4468455 CATCTCCGAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGA 4468396
Query 48487 CACCTGCACTTC 48498
||||| || ||
Sbjct 4468395 GACCTGGACATC 4468384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931390170684160
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