Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 114 2e-20
>seq6695
Length=6602074
Score = 114 bits (126), Expect = 2e-20
Identities = 547/858 (64%), Gaps = 29/858 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||||||||||||||||| | ||| ||||| ||||| ||| | ||||||
Sbjct 4468195 ATCTGGGAGATGTACAAGAAGGCCGAGGCTTCATTTTGGACTGCCGAGGAGGTCGATCTG 4468254
Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
| |||| | || ||| | | || | | | || | || || |||
Sbjct 4468255 TCGCAGGATGTTCGCGATTGGGAGATGACCCTGAACGATGGTGAACGCCACTTCATCACC 4468314
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
||||| | || ||||| || ||||| || ||||| ||| ||||| || |
Sbjct 4468315 CACGTGCTCGCGTTCTTCGCGGCCTCGGACGGTATCGTGTTGGAGAACCTCGCTTCTCGG 4468374
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| ||| || ||| | |||||| |||||||| || ||||| || |||
Sbjct 4468375 TTCATGTCGGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCGATC 4468434
Query 25714 GAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771
|| ||| | ||||| ||| |||| | | | || || ||| || ||||| | || |
Sbjct 4468435 GAGAATATCCACTCGGAGATGTACAGTCTA-CTCCTCGAT-ACCTACATCAAGGATGCGA 4468492
Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
|||||||| | || ||| ||||||||||| | | || || || || ||||||||
Sbjct 4468493 AAGAGAGAGACCACCTCTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGC 4468552
Query 25832 GGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888
|||||| ||||| |||||| || | || ||| || | |||| | || | |
Sbjct 4468553 AGTGGGCAATGAAATGGATCGACGGGTCTCAAAGC------TTCGCCGAGAGACTCATCG 4468606
Query 25889 CCTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946
|||| | |||| || || || ||||| ||| ||| || ||| || || || |||||
Sbjct 4468607 CCTTCGCCTGC-GTCGAAGGGATCTTCTTCTCCGGCAGTTTCTGC-GCGATTTTTTGGCT 4468664
Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACG 26005
|| || |||| ||| ||||| | ||||| || ||||| | ||| | ||||
Sbjct 4468665 AAAAAAGCGGGGGTTGATG-CCGGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACG 4468723
Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT- 26064
| || |||||| | ||||| || || || || |||| | | || | || || ||
Sbjct 4468724 AAGGCCTCCACTGCGATTTCGCGTGTCTCCTATACA--GTCTCCT--CAGGACCAAGCTG 4468779
Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124
| | ||| |||| | ||| || || || || || ||||||| |||||
Sbjct 4468780 ACCGAGGAGCGCGTCAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGTA 4468839
Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCATGAGCCAATACAT 26183
|||| |||||| ||| | ||||||||||||||
Sbjct 4468840 TGCGACGCTCTGCCATGCGCGTTGGTGGGGATGAAC-CGTGACTTGATGAGCCAATACAT 4468898
Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243
|||| |||||| || | |||||| | ||| || || | | ||| || |||
Sbjct 4468899 CGAGTTTGTGGCGGATCGGCTGCTGGGTGCGCTTGGGTACGGTAAGGTGTACGGTGTGCC 4468958
Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303
|| || || || | ||||| |||||| | | ||||||||||||||||| || ||
Sbjct 4468959 AAATCCATTTGATTGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAA 4469018
Query 26304 GAGGGTCGGCGACTATCA 26321
| |||||||||| |||||
Sbjct 4469019 GCGGGTCGGCGAGTATCA 4469036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928702582250560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |