Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6695 114 2e-20 >seq6695 Length=6602074 Score = 114 bits (126), Expect = 2e-20 Identities = 547/858 (64%), Gaps = 29/858 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| ||||| ||||| ||| | |||||| Sbjct 4468195 ATCTGGGAGATGTACAAGAAGGCCGAGGCTTCATTTTGGACTGCCGAGGAGGTCGATCTG 4468254 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | |||| | || ||| | | || | | | || | || || ||| Sbjct 4468255 TCGCAGGATGTTCGCGATTGGGAGATGACCCTGAACGATGGTGAACGCCACTTCATCACC 4468314 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || ||||| ||| ||||| || | Sbjct 4468315 CACGTGCTCGCGTTCTTCGCGGCCTCGGACGGTATCGTGTTGGAGAACCTCGCTTCTCGG 4468374 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| ||| || ||| | |||||| |||||||| || ||||| || ||| Sbjct 4468375 TTCATGTCGGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCGATC 4468434 Query 25714 GAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 || ||| | ||||| ||| |||| | | | || || ||| || ||||| | || | Sbjct 4468435 GAGAATATCCACTCGGAGATGTACAGTCTA-CTCCTCGAT-ACCTACATCAAGGATGCGA 4468492 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||||| | || ||| ||||||||||| | | || || || || |||||||| Sbjct 4468493 AAGAGAGAGACCACCTCTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGC 4468552 Query 25832 GGTGGGCCATGAAGTGGATCAACAG---CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| ||||| |||||| || | || ||| || | |||| | || | | Sbjct 4468553 AGTGGGCAATGAAATGGATCGACGGGTCTCAAAGC------TTCGCCGAGAGACTCATCG 4468606 Query 25889 CCTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 |||| | |||| || || || ||||| ||| ||| || ||| || || || ||||| Sbjct 4468607 CCTTCGCCTGC-GTCGAAGGGATCTTCTTCTCCGGCAGTTTCTGC-GCGATTTTTTGGCT 4468664 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACG 26005 || || |||| ||| ||||| | ||||| || ||||| | ||| | |||| Sbjct 4468665 AAAAAAGCGGGGGTTGATG-CCGGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACG 4468723 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT- 26064 | || |||||| | ||||| || || || || |||| | | || | || || || Sbjct 4468724 AAGGCCTCCACTGCGATTTCGCGTGTCTCCTATACA--GTCTCCT--CAGGACCAAGCTG 4468779 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 | | ||| |||| | ||| || || || || || ||||||| ||||| Sbjct 4468780 ACCGAGGAGCGCGTCAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGTA 4468839 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC-TCATGAGCCAATACAT 26183 |||| |||||| ||| | |||||||||||||| Sbjct 4468840 TGCGACGCTCTGCCATGCGCGTTGGTGGGGATGAAC-CGTGACTTGATGAGCCAATACAT 4468898 Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 |||| |||||| || | |||||| | ||| || || | | ||| || ||| Sbjct 4468899 CGAGTTTGTGGCGGATCGGCTGCTGGGTGCGCTTGGGTACGGTAAGGTGTACGGTGTGCC 4468958 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 || || || || | ||||| |||||| | | ||||||||||||||||| || || Sbjct 4468959 AAATCCATTTGATTGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAA 4469018 Query 26304 GAGGGTCGGCGACTATCA 26321 | |||||||||| ||||| Sbjct 4469019 GCGGGTCGGCGAGTATCA 4469036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928702582250560