Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq9362 105 7e-18 seq4833 104 3e-17 seq9055 82.4 8e-11 >seq9362 Length=5148269 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391 || || ||||||||||| ||||| || ||||| || || ||||| || ||||| ||| Sbjct 706909 GAGGATCAGTACATCCTGGACGCGGCCGAGGAGGCAGGGGTCGAGCTGCCCTACTCTTGC 706850 Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451 || || ||||||||||| | ||||| || || ||| |||||| | || ||||| | Sbjct 706849 CGGGCCGGCGCTTGTTCCACCTGTGCCGGGAAGATCGAGTCTGGCGCTGTCGACCAGTCC 706790 Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511 ||| || || || ||||| || | |||| |||| | | || || || ||||| Sbjct 706789 GACGGCTCGTTTCTCGACGACGATCTCATCGGAAAAGGTTACGTCCTTACCTGCGTTTCG 706730 Query 158512 TATCCTACAAGT--GATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558 |||||| ||| || |||||||| | || |||||||| ||||| Sbjct 706729 TATCCT--CAGTCCGACTGTGTGATCCATACCCACAAGGAATCTGAACT 706683 >seq4833 Length=3074427 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 158321 TCCCGTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCA 158380 ||| ||| || |||||| ||| |||| |||||||| ||||| ||||| |||| || Sbjct 2717486 TCCAGTGCGACGACGACGTCTACGTCCTCGACGCAGCGGAGGAGGCGGGGCTCGATCTGC 2717545 Query 158381 ATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCG 158440 ||||||||||| || || | || ||| || || || ||| | || | || ||| Sbjct 2717546 CGTACTCGTGCCGCGCCGGTTCGTGCTCGAGCTGCGCCGGGAAAGTGGTGACGGGATCCG 2717605 Query 158441 TAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGA 158500 | ||||| |||||| |||| ||||||||||||| |||| || | | || | Sbjct 2717606 TGGACCAGTCTGACCAGAGCTTCTTGGACGATGACCAGATCGGGGAAGGGTATGTCCTCA 2717665 Query 158501 CTTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552 |||||||| |||| || || |||| |||||| |||| || | ||||| Sbjct 2717666 CTTGTGTTGCTTACCCAACTTCTGATGTCGTGATTCAGACCCACCAAGAAGA 2717717 >seq9055 Length=383 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| ||||||||||||||||||||| ||| |||| | ||| | ||| ||||||||||| Sbjct 181 GGGATGTAGCGCAGCTTGGTAGCGCCTTTGTTTTGAGTACAAAATGTCACAGGTTCGAAT 240 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 241 CCTGTCATCCCTACCTAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547663333056840