Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq9362 105 7e-18
seq4833 104 3e-17
seq9055 82.4 8e-11
>seq9362
Length=5148269
Score = 105 bits (116), Expect = 7e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 158332 GACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGC 158391
|| || ||||||||||| ||||| || ||||| || || ||||| || ||||| |||
Sbjct 706909 GAGGATCAGTACATCCTGGACGCGGCCGAGGAGGCAGGGGTCGAGCTGCCCTACTCTTGC 706850
Query 158392 CGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 158451
|| || ||||||||||| | ||||| || || ||| |||||| | || ||||| |
Sbjct 706849 CGGGCCGGCGCTTGTTCCACCTGTGCCGGGAAGATCGAGTCTGGCGCTGTCGACCAGTCC 706790
Query 158452 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 158511
||| || || || ||||| || | |||| |||| | | || || || |||||
Sbjct 706789 GACGGCTCGTTTCTCGACGACGATCTCATCGGAAAAGGTTACGTCCTTACCTGCGTTTCG 706730
Query 158512 TATCCTACAAGT--GATTGTGTGATTGAGACTGACAAGGAAGAGGAACT 158558
|||||| ||| || |||||||| | || |||||||| |||||
Sbjct 706729 TATCCT--CAGTCCGACTGTGTGATCCATACCCACAAGGAATCTGAACT 706683
>seq4833
Length=3074427
Score = 104 bits (114), Expect = 3e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 158321 TCCCGTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCA 158380
||| ||| || |||||| ||| |||| |||||||| ||||| ||||| |||| ||
Sbjct 2717486 TCCAGTGCGACGACGACGTCTACGTCCTCGACGCAGCGGAGGAGGCGGGGCTCGATCTGC 2717545
Query 158381 ATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCG 158440
||||||||||| || || | || ||| || || || ||| | || | || |||
Sbjct 2717546 CGTACTCGTGCCGCGCCGGTTCGTGCTCGAGCTGCGCCGGGAAAGTGGTGACGGGATCCG 2717605
Query 158441 TAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGA 158500
| ||||| |||||| |||| ||||||||||||| |||| || | | || |
Sbjct 2717606 TGGACCAGTCTGACCAGAGCTTCTTGGACGATGACCAGATCGGGGAAGGGTATGTCCTCA 2717665
Query 158501 CTTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGA 158552
|||||||| |||| || || |||| |||||| |||| || | |||||
Sbjct 2717666 CTTGTGTTGCTTACCCAACTTCTGATGTCGTGATTCAGACCCACCAAGAAGA 2717717
>seq9055
Length=383
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750
||| ||||||||||||||||||||| ||| |||| | ||| | ||| |||||||||||
Sbjct 181 GGGATGTAGCGCAGCTTGGTAGCGCCTTTGTTTTGAGTACAAAATGTCACAGGTTCGAAT 240
Query 157751 CCTGTCACCCCGACTTAT 157768
||||||| ||| || |||
Sbjct 241 CCTGTCATCCCTACCTAT 258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547663333056840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |