Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq11203 100 3e-16 >seq11203 Length=4714577 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || || ||| |||| || | || ||| || || | || || | || Sbjct 1280975 CATTGCCTCCGCAGCAGCGGTTCCTTCGTCGAGTAAAGAGGCATTCGACATGGGGAGACC 1280916 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || |||||||| | ||| || |||||| | || ||| | || ||||| ||||| Sbjct 1280915 AGTGAGATCTGTGATCATCGTCTGAAAATTGAGCAGAGATTCAAGCCTGCCCTGCGATAT 1280856 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||| ||||| || ||||| ||||||||| ||||||||| Sbjct 1280855 CTCAGCCTGATACGGTGTGTATTGAGTGTACCAAGCAGGATTCTC 1280811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 ||||||| | ||| || |||||||||||||| | || ||||| ||||||||||| Sbjct 1283719 AATGGTGCCAAATGCTTCTTAACACCAATAGGACCCATACCCGGACCGCCACCTCCATGA 1283660 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 1283659 GGAATACAGAAGGTCTTGTGAAGATTGAGATGGCAAACATCAGCTCCA 1283612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578909748107480