Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5186 107 3e-18 seq4833 98.7 1e-15 seq5510 91.5 2e-13 >seq5186 Length=9353477 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | ||| ||| || || ||||| || ||||| || || || Sbjct 4318089 GCAGGAAGTACATGGGAATTCTCTGGGTGGAAGTTGTCATTAGGGCCATAAAGATTCGTG 4318030 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| || | | |||| ||| |||||||||| |||||||| ||| Sbjct 4318029 GGCATGCCCGAGATCGCGTCCCAGCCATGCTGAATTCGGTATGCCTGGCACATCTTAATA 4317970 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGG 47152 || || ||||| ||||| ||||| | |||||| | ||||||||||| Sbjct 4317969 CCCGCGATCTTGGCAATGGCATACCACTCATTAGTGGGTTCAAGAGG 4317923 >seq4833 Length=3074427 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | || | ||| | |||||||||||||| || |||||||||||||| ||| Sbjct 2717717 TCTTCTTGGTGGGTCTGAATCACGACATCAGAAGTTGGGTAAGCAACACAAGTGAGGACA 2717658 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 ||||||| | || || ||||| |||||||| ||| ||| ||||| || | || Sbjct 2717657 TACCCTTCCCCGATCTGGTCATCGTCCAAGAAGCTCTGGTCAGACTGGTCCACGGATCCC 2717598 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 | || | || || || || || || | ||| || || || ||||| | ||| Sbjct 2717597 GTCACCACTTTCCCGGCGCAGCTCGAGCACGAACCGGCGCGGCACGAGTACGGCAGATCG 2717538 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| | ||||| ||||| || |||| ||| Sbjct 2717537 AGCCCCGCCTCCTCCGCTGCGTCGAGGACGTA 2717506 >seq5510 Length=2415207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716 ||||| || ||||| || || ||| | |||| |||||| ||| || || | |||||| Sbjct 935484 GGATAAGCCACACAGGTCAGGACATAACCTTGTTCAATGAGATTGTCGTCAAGGAACGAG 935543 Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776 ||| |||||| || || || || | | ||| || ||||| | ||||| || || Sbjct 935544 CCGTCAGATTGGTCGACAGTGCCTGACGCTAGCTTCCCGGCACAGGTGGAACATGCGCCA 935603 Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836 || | ||||||||| | || || || | |||||||||||||| || ||||| ||| Sbjct 935604 GCCCTGCAAGAGTAGGGCAGCTCGACTCCTGCCTCCTCTGCTGCATCCAGTATGTACTGA 935663 Query 32837 TCATC 32841 || || Sbjct 935664 TCCTC 935668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665392504488680