Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq5186 107 3e-18
seq4833 98.7 1e-15
seq5510 91.5 2e-13
>seq5186
Length=9353477
Score = 107 bits (118), Expect = 3e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045
|| ||||| ||||| ||| | ||| ||| || || ||||| || ||||| || || ||
Sbjct 4318089 GCAGGAAGTACATGGGAATTCTCTGGGTGGAAGTTGTCATTAGGGCCATAAAGATTCGTG 4318030
Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105
||||| ||||| || | | |||| ||| |||||||||| |||||||| |||
Sbjct 4318029 GGCATGCCCGAGATCGCGTCCCAGCCATGCTGAATTCGGTATGCCTGGCACATCTTAATA 4317970
Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGG 47152
|| || ||||| ||||| ||||| | |||||| | |||||||||||
Sbjct 4317969 CCCGCGATCTTGGCAATGGCATACCACTCATTAGTGGGTTCAAGAGG 4317923
>seq4833
Length=3074427
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680
|||||||| | || | ||| | |||||||||||||| || |||||||||||||| |||
Sbjct 2717717 TCTTCTTGGTGGGTCTGAATCACGACATCAGAAGTTGGGTAAGCAACACAAGTGAGGACA 2717658
Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740
||||||| | || || ||||| |||||||| ||| ||| ||||| || | ||
Sbjct 2717657 TACCCTTCCCCGATCTGGTCATCGTCCAAGAAGCTCTGGTCAGACTGGTCCACGGATCCC 2717598
Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800
| || | || || || || || || | ||| || || || ||||| | |||
Sbjct 2717597 GTCACCACTTTCCCGGCGCAGCTCGAGCACGAACCGGCGCGGCACGAGTACGGCAGATCG 2717538
Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832
| ||| | ||||| ||||| || |||| |||
Sbjct 2717537 AGCCCCGCCTCCTCCGCTGCGTCGAGGACGTA 2717506
>seq5510
Length=2415207
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716
||||| || ||||| || || ||| | |||| |||||| ||| || || | ||||||
Sbjct 935484 GGATAAGCCACACAGGTCAGGACATAACCTTGTTCAATGAGATTGTCGTCAAGGAACGAG 935543
Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776
||| |||||| || || || || | | ||| || ||||| | ||||| || ||
Sbjct 935544 CCGTCAGATTGGTCGACAGTGCCTGACGCTAGCTTCCCGGCACAGGTGGAACATGCGCCA 935603
Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836
|| | ||||||||| | || || || | |||||||||||||| || ||||| |||
Sbjct 935604 GCCCTGCAAGAGTAGGGCAGCTCGACTCCTGCCTCCTCTGCTGCATCCAGTATGTACTGA 935663
Query 32837 TCATC 32841
|| ||
Sbjct 935664 TCCTC 935668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665392504488680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |