Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6695 123 3e-23 seq7521 120 4e-22 seq1104 98.7 1e-15 seq555 93.3 5e-14 >seq6695 Length=6602074 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || || | | |||||||||| | ||||||||||||||| | ||| Sbjct 4468516 GCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGAC 4468575 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 ||||| |||||||||| | || | || || || || || || || |||||| Sbjct 4468576 GG---GTCTCAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTC 4468632 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||||| |||| |||| | || |||||||| | ||||| || || Sbjct 4468633 TTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCCGGGATTA 4468692 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||| | || || ||||| || || |||||| Sbjct 4468693 ACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCAC 4468734 >seq7521 Length=6323785 Score = 120 bits (132), Expect = 4e-22 Identities = 294/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATT-GTGGATTTTCTCA 175249 |||||||| || |||| | ||||| | || ||| | | | | || || ||||| | Sbjct 1637782 TGATGTTGCCGGAGTTGATGAAGCCAAGCAAGA-CTTCATGGAAGTAGTCGAGTTTCTGA 1637724 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 || | || ||||||| || || |||| ||| || ||| | || || | | Sbjct 1637723 AGAAGCCTGAGAGATTCACTGCGGTCGGCGCCAGGATTCCTAAAGGTGTTCTCCTTGTCG 1637664 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || || ||||| |||||||| || || || ||| || || |||||| | ||||| Sbjct 1637663 GTCCTCCTGGTACCGGAAAGACGCTTCTGGCAAAAGCAATTGCCGGTGAAGCTGGTGTCC 1637604 Query 175370 CATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 | || || ||| | | | ||||||||||||||||| ||||| |||||| | Sbjct 1637603 CTTTTTTCTCCATCTCGGGTTCCGAGTTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCGA 1637544 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 |||| || |||||||| | | ||| |||||| ||||| || ||||| | |||| Sbjct 1637543 GGGTCCGTGATCTCTTCAAGAAAGCCAAGGAAAATGCTCCATGCATCGTCTTTGTGGATG 1637484 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT---GGTATGCCAGCAAATGACGAGA 175546 | || || || || || | |||| | | ||||| ||| || |||||||| | Sbjct 1637483 AAATAGACGCTGTCGGTAGGCAAAGAGGAACTGGTATCGGT---GGAGGTAATGACGAAA 1637427 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 ||||||| || |||| || || || ||||||||||| || || || | | || || | Sbjct 1637426 GAGAACAGACCCTTAACCAGCTCCTGACCGAGATGGACGGTTTCGAGGGTAATACCGGTA 1637367 Query 175607 TTGTGGTTATTGCGGCCACTAA 175628 | | || ||||| || || || Sbjct 1637366 TCATCGTGATTGCAGCTACAAA 1637345 >seq1104 Length=4098138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGC 65082 |||||||| | ||||| ||||||||| | ||| ||||| |||||||||| | Sbjct 1191563 AAGAAGGCACAGTGGGCGATGAAATGGATCGACGG---GTCTCAGAGCTTCGCCGAGAGA 1191507 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTAT 65142 || | || || || || || || || |||||||||||||| |||||||| || | | Sbjct 1191506 CTCATCGCCTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGCGCGATATTT 1191447 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202 ||| |||| ||||| || | ||||| || || ||||| || || | || || ||| Sbjct 1191446 TGGCTGAAAAAGCGCGGGTTAATGCCGGGATTAACTTTCTCGAACGAGTTGATCTCGCGA 1191387 Query 65203 GATGAGGGTCTCCAC 65217 || || || |||||| Sbjct 1191386 GACGAAGGCCTCCAC 1191372 >seq555 Length=388411 Score = 93.3 bits (102), Expect = 5e-14 Identities = 187/274 (68%), Gaps = 15/274 (5%) Strand=Plus/Minus Query 175323 GGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG 175382 |||||| ||||| | || ||||| | || || ||| | || || ||| || || Sbjct 77104 GGGAAA-ACCCTATTGGCTCGAGCAGTGGCAGGGGAAGCGGGAGTGCCCTTCTTCTCCTG 77046 Query 175383 CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCT 175442 | | || | | ||||||||| | || || ||||| ||||| |||||| | ||| | Sbjct 77045 CGCGGCTTCGGAGTTTGTGGAGCTTTTCGTGGGTGTTGGTGCGTCTAGGGTTAGGGATTT 76986 Query 175443 CTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATG 175498 ||||| | || |||| || ||||| ||||| ||||||||||||||||||| Sbjct 76985 GTTTGAGAAGGC----GAAATCGAAAGCGCCATGCATTGTGTTCATTGATGAGATTGATG 76930 Query 175499 CGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAA 175555 | ||||| | ||| | | ||||| |||| || ||||| |||||||| || | Sbjct 76929 CTGTGGGGAGGCAGAGAGGAGCTGGACTTGGT---GGAGGGAATGATGAGAGAGAGCAGA 76873 Query 175556 CAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | |||||||| | | || |||||||| || || Sbjct 76872 CGATTAATCAGTTGTTGACGGAGATGGACGGATT 76839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596478257737120