Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq6356 98.7 1e-15
seq10212 96.9 4e-15
seq10028 95.1 1e-14
seq5683 95.1 1e-14
>seq6356
Length=1416205
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| |||| ||||||| |||||||||||
Sbjct 609070 CTCCCGTTTTTCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACTGATTGGTCGTA 609129
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 609130 GGTTCGAATCCTACTTGGGGAG 609151
>seq10212
Length=552357
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| |||| ||||||| |||||||||||||||| |||
Sbjct 147419 TTCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 147478
Query 18188 CCTACCTGGGGAG 18200
||||| |||||||
Sbjct 147479 CCTACTTGGGGAG 147491
>seq10028
Length=556362
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 289950 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 289891
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 289890 GGTTCGAATCCTACTTGGGGAG 289869
>seq5683
Length=2377369
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 1558799 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 1558740
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 1558739 GGTTCGAATCCTACTTGGGGAG 1558718
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 1559381 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 1559322
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 1559321 GGTTCGAATCCTACTTGGGGAG 1559300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561162065915600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |