Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq10212 96.9 4e-15
seq6356 96.9 4e-15
seq10028 91.5 2e-13
seq5683 91.5 2e-13
>seq10212
Length=552357
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||| ||
Sbjct 147499 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGATCGC 147442
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 147441 TCTACCACTGAGCTACTGAGGA 147420
>seq6356
Length=1416205
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||| ||
Sbjct 609159 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGATCGC 609102
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 609101 TCTACCACTGAGCTACTGAGGA 609080
>seq10028
Length=556362
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 289861 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 289918
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 289919 TCTACCACTGAGCTACTGAGGA 289940
>seq5683
Length=2377369
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 1558710 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 1558767
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 1558768 TCTACCACTGAGCTACTGAGGA 1558789
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 1559292 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 1559349
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 1559350 TCTACCACTGAGCTACTGAGGA 1559371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571966811320680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |