Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6695 118 2e-21 seq7521 113 8e-20 seq5186 95.1 2e-14 >seq6695 Length=6602074 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || || || ||||| || | || | || || || || |||||| Sbjct 804870 ATACCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 804811 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| |||||||| || | || || || || ||| Sbjct 804810 GCCAAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGA 804751 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || || | ||| | ||| ||| || || ||| |||| Sbjct 804750 GGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCA 804691 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| |||||||||||||| Sbjct 804690 ACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || || || ||||| || | || | || || || || |||||| Sbjct 810002 ATACCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 809943 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| |||||||| || | || || || || ||| Sbjct 809942 GCCAAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGA 809883 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || || | ||| | ||| ||| || || ||| |||| Sbjct 809882 GGAATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCA 809823 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| |||||||||||||| Sbjct 809822 ACTTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || ||||| || | || | || || || || ||||| Sbjct 805098 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 805039 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||| || | ||||||||| || ||| Sbjct 805038 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 804979 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || || | |||| ||| ||| || ||||| ||| Sbjct 804978 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 804919 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || || || ||||| || || ||||| Sbjct 804918 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || ||||| || | || | || || || || ||||| Sbjct 810230 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 810171 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || ||||| || | ||||||||| || ||| Sbjct 810170 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 810111 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || || | |||| ||| ||| || ||||| ||| Sbjct 810110 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 810051 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || || || ||||| || || ||||| Sbjct 810050 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | |||||| || || ||||| |||||||| || || ||||| Sbjct 811058 TGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGTATC 810999 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||| ||||| || |||||| |||||||| || || || ||| Sbjct 810998 TTTGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACCTCTAGAGTGATGGTCTTTCCT 810939 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| Sbjct 810938 GTGAGAGTCTTGACGAATATTTGCAT 810913 >seq7521 Length=6323785 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || ||||| || | || | ||| || || || |||||| Sbjct 4430933 ATACCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 4430992 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | |||||||||||||| || | || || || || ||| Sbjct 4430993 GCCAAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGA 4431052 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || ||||| | || | ||| ||| || || || ||| Sbjct 4431053 GGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCG 4431112 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || ||||| ||||| |||||||| Sbjct 4431113 ACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 >seq5186 Length=9353477 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||||| || | ||| || ||||| || || | | || || | Sbjct 4547123 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCCAGTGTCCTCCCA 4547064 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||| || || | ||||| ||||| || || || ||||| || Sbjct 4547063 TCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGAATCCCTTCCTTG 4547004 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||||||| | ||| || || ||||| ||| || || ||||| || Sbjct 4547003 TCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATC 4546944 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || |||||||| Sbjct 4546943 GTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899516651665680