Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5186 84.2 3e-11
seq1104 84.2 3e-11
>seq5186
Length=9353477
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | || || | || |||||||| || ||| | || || ||| ||
Sbjct 4547136 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATAACACTGGAGGTTGAAAGCTC 4547195
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | || |||||||| || || || || || || || || | || || ||
Sbjct 4547196 GGACACGATCGAGAACGTGAAGTCGAAGATTCAGGACAAGGAGGGAATCTCGCCCGACCA 4547255
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| || |||| | ||||| ||||||||||||||| ||||| | || ||||| ||
Sbjct 4547256 ACAGAGGCTGATATTCGCCGGAAAGCAGCTCGAAGATGGACGAACTCTGTCCGATTACAA 4547315
Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025
|||| |||||| |||| |||||
Sbjct 4547316 TATACAGAAAGAGTCGACTCTTCA 4547339
>seq1104
Length=4098138
Score = 84.2 bits (92), Expect = 3e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
||||| ||||| ||| | ||||| |||| || || || ||||| || |||||
Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
|| ||||||| || | ||||| ||||||||||||| ||| || | || |||||
Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAG 1191477
Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321
|| || |||||||| ||||| || || | ||| || || || ||
Sbjct 1191478 ATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCT 1191521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731759941248400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |