Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5186 84.2 3e-11 seq1104 84.2 3e-11 >seq5186 Length=9353477 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | || |||||||| || ||| | || || ||| || Sbjct 4547136 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATAACACTGGAGGTTGAAAGCTC 4547195 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || |||||||| || || || || || || || || | || || || Sbjct 4547196 GGACACGATCGAGAACGTGAAGTCGAAGATTCAGGACAAGGAGGGAATCTCGCCCGACCA 4547255 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || |||| | ||||| ||||||||||||||| ||||| | || ||||| || Sbjct 4547256 ACAGAGGCTGATATTCGCCGGAAAGCAGCTCGAAGATGGACGAACTCTGTCCGATTACAA 4547315 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 |||| |||||| |||| ||||| Sbjct 4547316 TATACAGAAAGAGTCGACTCTTCA 4547339 >seq1104 Length=4098138 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| ||||| ||| | ||||| |||| || || || ||||| || ||||| Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | ||||| ||||||||||||| ||| || | || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAG 1191477 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || |||||||| ||||| || || | ||| || || || || Sbjct 1191478 ATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCT 1191521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731759941248400