Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 100 6e-16
seq5265 96.9 7e-15
>seq6695
Length=6602074
Score = 100 bits (110), Expect = 6e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | |||||| | || | || | || | || || |||||| || |||
Sbjct 810686 ATACCACCGCGAAGACGGAGAACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCA 810627
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| |||| ||||| ||||||||||| | ||||||||| || ||
Sbjct 810626 GCAAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGA 810567
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| ||||| || || || || |||||| || | || || |||
Sbjct 810566 GGGATTCCTTCCTTATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCA 810507
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || ||||| || || | || || | || ||||||||
Sbjct 810506 ACCTCGAGGGTGATTGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457
Score = 100 bits (110), Expect = 6e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | || | || | |||||| ||| || || ||
Sbjct 810914 ATACCACCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCT 810855
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | |||||| |||| |||| ||||| ||||||||||| | ||||| || || ||
Sbjct 810854 GCAAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGA 810795
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| ||||| || || || || ||||| || | |||||| ||
Sbjct 810794 GGGATCCCTTCCTTATCCTGAATCTTCGCCTTAACATTGTCAATGGTATCTGAGCTCTCA 810735
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| |||||||| || || | || || | ||| ||||||||
Sbjct 810734 ACTTCAAGAGTTATGGTTTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 810685
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | || | || | || | ||| | || || ||| || || |||
Sbjct 805098 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 805039
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | || |||||||||||||| | ||||||||| || ||
Sbjct 805038 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 804979
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| || || |||||||| || | || || |||
Sbjct 804978 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 804919
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || |||||||| || | || || | || ||||||||
Sbjct 804918 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | || | || | || | ||| | || || ||| || || |||
Sbjct 810230 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 810171
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | | |||| || | || |||||||||||||| | ||||||||| || ||
Sbjct 810170 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 810111
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| || || |||||||| || | || || |||
Sbjct 810110 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 810051
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || |||||||| || | || || | || ||||||||
Sbjct 810050 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001
>seq5265
Length=2761455
Score = 96.9 bits (106), Expect = 7e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| || || | || |||| ||| | ||||| |||||| ||||| || || | |
Sbjct 1298818 CCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGTAGTCTGCT 1298877
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| |||||| |||| || | ||| ||||||||||| || | ||||||||||||||||||
Sbjct 1298878 AGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 1298937
Query 192430 ATTCCTTCTTTATCTTGT 192447
|| || || || || |||
Sbjct 1298938 ATGCCCTCCTTGTCCTGT 1298955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984325495401150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |