Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6695 100 6e-16 seq5265 96.9 7e-15 >seq6695 Length=6602074 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | || | || | || || |||||| || ||| Sbjct 810686 ATACCACCGCGAAGACGGAGAACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCA 810627 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| |||| ||||| ||||||||||| | ||||||||| || || Sbjct 810626 GCAAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGA 810567 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || || || |||||| || | || || ||| Sbjct 810566 GGGATTCCTTCCTTATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCA 810507 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| || || | || || | || |||||||| Sbjct 810506 ACCTCGAGGGTGATTGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | || | |||||| ||| || || || Sbjct 810914 ATACCACCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCT 810855 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| |||| ||||| ||||||||||| | ||||| || || || Sbjct 810854 GCAAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGA 810795 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || ||||| || | |||||| || Sbjct 810794 GGGATCCCTTCCTTATCCTGAATCTTCGCCTTAACATTGTCAATGGTATCTGAGCTCTCA 810735 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| |||||||| || || | || || | ||| |||||||| Sbjct 810734 ACTTCAAGAGTTATGGTTTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 810685 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | || | ||| | || || ||| || || ||| Sbjct 805098 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 805039 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || |||||||||||||| | ||||||||| || || Sbjct 805038 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 804979 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || |||||||| || | || || ||| Sbjct 804978 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 804919 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || |||||||| || | || || | || |||||||| Sbjct 804918 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || | || | ||| | || || ||| || || ||| Sbjct 810230 ATACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCA 810171 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || |||||||||||||| | ||||||||| || || Sbjct 810170 GCAAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGA 810111 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || |||||||| || | || || ||| Sbjct 810110 GGGATTCCTTCTTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCA 810051 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || |||||||| || | || || | || |||||||| Sbjct 810050 ACCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001 >seq5265 Length=2761455 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || || | || |||| ||| | ||||| |||||| ||||| || || | | Sbjct 1298818 CCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGTAGTCTGCT 1298877 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| || | ||| ||||||||||| || | |||||||||||||||||| Sbjct 1298878 AGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGATCAGGTGGT 1298937 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || || || || ||| Sbjct 1298938 ATGCCCTCCTTGTCCTGT 1298955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984325495401150