Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 93.3 8e-14
seq5265 93.3 8e-14
>seq6695
Length=6602074
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| ||||||||||| || | |||||||||||| || || ||||||||||| ||||| ||
Sbjct 805014 TGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATC 804955
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| |||||||| || || || || ||| || || || || || ||||||||
Sbjct 804954 TTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCG 804895
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || | ||| ||||||||
Sbjct 804894 GTAAGAGTCTTTACGAAGATCTGCAT 804869
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
|| ||||||||||| || | |||||||||||| || || ||||||||||| ||||| ||
Sbjct 810146 TGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATC 810087
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| |||||||| || || || || ||| || || || || || ||||||||
Sbjct 810086 TTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCG 810027
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || | ||| ||||||||
Sbjct 810026 GTAAGAGTCTTTACGAAGATCTGCAT 810001
Score = 89.7 bits (98), Expect = 9e-13
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967
|||| | || |||| ||||| |||||||| || | |||||||||||| || || |||||
Sbjct 810618 TCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCC 810559
Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027
||| ||||| || || || || |||||| || || || || ||| || || ||
Sbjct 810558 TTCCTTATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAG 810499
Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || || | || || | ||| ||||||||
Sbjct 810498 GGTGATTGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457
>seq5265
Length=2761455
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
|||| | ||||| || || | || |||| ||| | ||||| |||||| |||||| |
Sbjct 1298810 TCATGGTTCCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGT 1298869
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
| |||| || | |||| | || || | ||| ||||||||||| || | |||||||| |
Sbjct 1298870 AGTCTGCTAGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGAT 1298929
Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980
|||||||||| || || || || |||
Sbjct 1298930 CAGGTGGTATGCCCTCCTTGTCCTGT 1298955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904997412364200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |