Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6695 93.3 8e-14 seq5265 93.3 8e-14 >seq6695 Length=6602074 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | |||||||||||| || || ||||||||||| ||||| || Sbjct 805014 TGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATC 804955 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||||||| || || || || ||| || || || || || |||||||| Sbjct 804954 TTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCG 804895 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 804894 GTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | |||||||||||| || || ||||||||||| ||||| || Sbjct 810146 TGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATC 810087 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||||||| || || || || ||| || || || || || |||||||| Sbjct 810086 TTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCG 810027 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 810026 GTAAGAGTCTTTACGAAGATCTGCAT 810001 Score = 89.7 bits (98), Expect = 9e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 |||| | || |||| ||||| |||||||| || | |||||||||||| || || ||||| Sbjct 810618 TCGTCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCC 810559 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 ||| ||||| || || || || |||||| || || || || ||| || || || Sbjct 810558 TTCCTTATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAG 810499 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || | || || | ||| |||||||| Sbjct 810498 GGTGATTGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457 >seq5265 Length=2761455 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||| || || | || |||| ||| | ||||| |||||| |||||| | Sbjct 1298810 TCATGGTTCCACCCCTGAGCCTCAACACTAGATGGAGAGTAGACTCTTTCTGAATATTGT 1298869 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | |||| || | |||| | || || | ||| ||||||||||| || | |||||||| | Sbjct 1298870 AGTCTGCTAGGGTTCGTCCATCTTCTAGTTGCTTACCAGCAAATATCAGCCTCTGTTGAT 1298929 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||||| || || || || ||| Sbjct 1298930 CAGGTGGTATGCCCTCCTTGTCCTGT 1298955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904997412364200