Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3309 89.7 2e-12 seq8087 84.2 6e-11 seq1 84.2 6e-11 >seq3309 Length=3363706 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| || | | Sbjct 2883781 TACCCTTCCTCTTGCCTCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGAA 2883840 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 ||||||||| |||||| || || || ||||| || || ||||| Sbjct 2883841 GCATAGGAACAATACCGTTAGATGTCCCATTCGTGCCACGAAT 2883883 >seq8087 Length=38523 Score = 84.2 bits (92), Expect = 6e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 408937 TTAAAAAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGG 408996 |||| ||| || || ||||||||||||||| || |||||||||||||||| |||| || Sbjct 11893 TTAATAAGGTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGG 11834 Query 408997 GTTCGAGTCCCACATAGAACATTTTT 409022 ||||||| ||| | || ||||||| Sbjct 11833 GTTCGAGCCCCGCCGGGACCATTTTT 11808 >seq1 Length=11827220 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| | ||| ||||| | || || |||||| | ||| | | Sbjct 5390383 GGCGATGAGCCCACAGCATTCACAGACATGTATCCTATATGCATCACTTTGATCAAACAA 5390442 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| ||| | | ||||| |||| ||||||||| || || |||||||| || Sbjct 5390443 CCTCTCCTTCAGAAAGTGGGCAGCACCATGTGCAATCATACAGTCGCGTTCCATTTCTCC 5390502 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 ||||| ||||||||||| |||| | ||||| || ||||| | ||||| Sbjct 5390503 AAAACGGAGACCACCATCACGAGATCGTCCCTCCGCTGGCTGCCTCGTGAG 5390553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471586612485913