Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1104 168 8e-36 seq6695 154 2e-31 >seq1104 Length=4098138 Score = 168 bits (186), Expect = 8e-36 Identities = 193/256 (75%), Gaps = 9/256 (4%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| |||||||||||||| ||||||||||||||||| || || | | |||| || || | Sbjct 1191656 CCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCT 1191715 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||||| || |||||||| ||| || |||||| |||||| | Sbjct 1191716 GAACATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAA 1191775 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGT 869807 | ||||| ||||| || |||| ||||| || ||| ||||| | || | | |||| | Sbjct 1191776 AGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAAT 1191835 Query 869808 ---GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| | ||| || || ||||||||||||||||| | ||||||||| |||| Sbjct 1191836 CTCGGAC--ATCCTGCG-ACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCT 1191892 Query 869865 TTTTGTACATCTCCCA 869880 | |||||||||||||| Sbjct 1191893 TCTTGTACATCTCCCA 1191908 Score = 149 bits (164), Expect = 8e-30 Identities = 197/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| ||||| || | | || ||||| | |||||||| Sbjct 1191379 CCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTAACCCGCGCTTT 1191438 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || |||||||| || |||||||| ||||| ||||| ||||| || || ||| ||| ||| Sbjct 1191439 TTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCAGGCGAAG 1191498 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||||| | |||||| ||| | | ||| ||| || |||||| ||||||||||| Sbjct 1191499 GCGATGAGTCTCTCGGCGAAGCTCT-GAGACCC-----GTCGATCCATTTCATCGCCCAC 1191552 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||||| || || | || | || |||||||||||||| |||||||| | || Sbjct 1191553 TGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGTCTCTCTCC 1191612 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || |||||| | |||||||||| ||||| Sbjct 1191613 TTCGCGTCCTTTATGTAGGTGTCGAGGAGGAG 1191644 Score = 118 bits (130), Expect = 1e-20 Identities = 217/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | |||||||||||||||||| |||| ||||||||| Sbjct 1191064 GCCTTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATC 1191123 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||||| || || || | ||| ||| |||| ||||||| | Sbjct 1191124 AGTTCCATCCAATCAAATGGATTCGTTACACCGTACACCTTGCCGCACCCGAGCGCACCC 1191183 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| || || || || ||||||||||| || | ||| ||| | ||||||||| | Sbjct 1191184 AGCAACCGATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACC 1191243 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-AT 868929 | ||| || |||| |||| || ||||| ||||||| ||||| || || ||| | Sbjct 1191244 AACGCGCATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTC-ACGCAC 1191302 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 ||| || || | || || ||| | ||||||| ||| | ||||||| ||||| | Sbjct 1191303 GAT-TGACTTCACGCGCTCCTCCGTGAGCTTGTTCCTGAGGAGACTGTAGAGGAGGCACG 1191361 Query 868989 CAAAGTCGCAGTG 869001 | || |||||||| Sbjct 1191362 CGAAATCGCAGTG 1191374 >seq6695 Length=6602074 Score = 154 bits (170), Expect = 2e-31 Identities = 194/265 (73%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| |||||| || | | || ||||| | || ||||| Sbjct 4468727 CCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCCCCGCTTT 4468668 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || |||||||| || |||||||||||||| ||||| ||||| || |||||| ||| ||| Sbjct 4468667 TTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAG 4468608 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||||| | |||||| ||| | | ||| ||| || |||||| ||||| ||||| Sbjct 4468607 GCGATGAGTCTCTCGGCGAAGCT-TTGAGACCC-----GTCGATCCATTTCATTGCCCAC 4468554 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||||| ||| || | || || || |||||||| |||||||||||||| | || Sbjct 4468553 TGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCTCTCT 4468494 Query 869420 GCCGGGTCCTTGACATAGGTGTCGA 869444 || ||||||| ||||| |||| Sbjct 4468493 TTCGCATCCTTGATGTAGGTATCGA 4468469 Score = 120 bits (132), Expect = 4e-21 Identities = 210/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||||| || ||| |||||| ||||||||||| |||| ||||| |||| ||||||| Sbjct 4469033 TACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATCAGCTCCATC 4468974 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || || || || ||| ||| ||| || | || |||| | ||||| || Sbjct 4468973 CAATCAAATGGATTTGGCACACCGTACACCTTACCGTACCCAAGCGCACCCAGCAGCCGA 4468914 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||||||||| |||| ||| | | | |||||| || | | ||| Sbjct 4468913 TCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACCAACGCGCAT 4468854 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| || |||||| ||||||| |||||||| ||| || ||| || || Sbjct 4468853 GGCAGAGCGTCGCATACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACGAT-TGACTT 4468795 Query 868940 GGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCA 868998 | | || || | | ||||| | ||| | |||| || || || || || ||||| Sbjct 4468794 GACGCGCTCCTCGGTCAGCTTGGTCCTGAGGAGACTGTATAGGAGACACGCGAAATCGCA 4468735 Query 868999 GTG 869001 ||| Sbjct 4468734 GTG 4468732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106133989697933