Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6695 107 2e-18 seq1 104 2e-17 seq5186 89.7 4e-13 >seq6695 Length=6602074 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| ||||| | |||||||| ||||| || ||||| ||| | Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 804701 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 804760 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || |||||||| ||||||| | | || |||| || |||||| Sbjct 804761 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 804820 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || | ||| |||| Sbjct 804821 ATCCAAAAGGAATCGACTCTCCACCTGGT 804849 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| ||||| | |||||||| ||||| || ||||| ||| | Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 809833 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 809892 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || |||||||| ||||||| | | || |||| || |||||| Sbjct 809893 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 809952 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || | ||| |||| Sbjct 809953 ATCCAAAAGGAATCGACTCTCCACCTGGT 809981 >seq1 Length=11827220 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 ||||| |||||||| || ||| | |||||||| ||||| ||| |||| || |||| || Sbjct 5218874 ATGCAGATATTTGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 5218815 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 5218814 GAC---ACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGGATCCCACCGGAC 5218758 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| ||||||||||||| | | || ||||||| ||| Sbjct 5218757 CAGCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTAC 5218698 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || || ||||| | ||| |||| | | |||||||| |||| Sbjct 5218697 AACATCCAGAAGGAGTCTACCCTTCACTTGGTCCTCCGTCTGCGAGGTGGAA 5218646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 209/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 34311 GATGAG---CTCAGTCTCCGGGTTGTCACATTCCGGA-CACAACACAAACTTGCGGATGA 34366 |||||| ||| || || ||||| |||| ||| | ||| ||| |||| ||||| Sbjct 7201519 GATGAGTATCTCGGTTTCAGGGTTCCCACAA-CCGTAGCACTGGACATACTTTTTGATGA 7201577 Query 34367 AACCATCAAGCAGGTCCTGTAA-CTTAACGGAGTCGTGGGAGCCGTTGACGA-TGAATCG 34424 || || || || ||||| | ||| | | |||||| | || || || | |||| | Sbjct 7201578 AATTCTCGAGAAG-TCCTGCCAGCTTGGCAGTGTCGTGAGCCCCATTCACCAGTGAA--G 7201634 Query 34425 TTCGTTT-TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCG 34483 ||| | || | ||| | || | ||| || || |||||||| || ||||||||||| | Sbjct 7201635 TTCCAGTCTTCTCATCAAACTTGGATTGGGCACCAAGCTCGCAACCAAAGTACTTTGTAG 7201694 Query 34484 GGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCT 34543 |||| || || | ||| | |||||||| || || ||||||||| | |||| Sbjct 7201695 TGTAAGAAGCAGGTCTTCCCAAGGCCTTGGCAATGTCAACCATGTTGACCACATTGGTCT 7201754 Query 34544 TGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGA 34603 ||||||| |||||| | ||||| | ||||| || ||||| ||||| | ||||| Sbjct 7201755 TGATGCCATTGCCCCTGCCTTCAATCTTGGTAACCATCTTTGGCATCTTGTACCTGTAGA 7201814 Query 34604 ACGCGTC 34610 | || || Sbjct 7201815 AGGCATC 7201821 >seq5186 Length=9353477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| | |||||||| || || || | || |||| | Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTCC 4546968 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||||| ||||| ||||| | ||| |||||| Sbjct 4546969 GACACGATCGAGAATGTCAAAACCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCAG 4547028 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || ||||||||||| |||| || ||| |||| |||||||| Sbjct 4547029 CAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAAT 4547088 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || ||| |||| ||||| | | || || || |||| Sbjct 4547089 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTCCGTGGAGGAA 4547137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | ||||| || || |||||| |||| |||| | Sbjct 7866254 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAGACTATTACCCTCGAGGTGGAGAGCTCC 7866195 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | ||||| ||||| ||||| || || | ||| ||| || Sbjct 7866194 GACACCATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCAG 7866135 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| || || || ||||||||||||| | || |||| || |||||| Sbjct 7866134 CAAAGGCTGATTTTCGCCGGGAAGCAGCTGGAGGATGGACGCACCCTGGCCGACTACAAC 7866075 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| ||||| | ||| |||| | | ||||| || || Sbjct 7866074 ATCCAGAAAGAGTCTACCCTCCACTTGGTTCTCCGTCTGCGTGGTGG 7866028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412779969070757