Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 199 6e-45
seq6695 197 2e-44
>seq1104
Length=4098138
Score = 199 bits (220), Expect = 6e-45
Identities = 241/324 (74%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
|||||||| || |||||| ||||| | |||| | |||| ||| | ||||||||
Sbjct 1191379 CCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGG-CATTAACCCGCGCTT 1191437
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|| |||||||| || || ||||| ||||| ||||| ||||| || || ||| ||| ||
Sbjct 1191438 TTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCAGGCGAA 1191497
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| ||| ||| | |||||| || | | || ||| || |||||| |||||||||||
Sbjct 1191498 GGCGATGAGTCTCTCGGCGAAGCTCTG-AGACCC-----GTCGATCCATTTCATCGCCCA 1191551
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| |||||| || || | || | || |||||||||||||| |||||||| ||||
Sbjct 1191552 CTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGTCTCTCTC 1191611
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
|| |||||| | ||||||||||| |||||| ||| |||| || |||||||| ||
Sbjct 1191612 CTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATCTCCGAATGGATGTTCTC 1191671
Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663
||| |||||||||||||| || ||
Sbjct 1191672 GATCGCGATCTGGAAGCCGTAGAA 1191695
Score = 118 bits (130), Expect = 2e-20
Identities = 156/213 (73%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| | || || || || |||||| ||| || |||||||| ||| || |||
Sbjct 1191703 GCCTCCGCGACCTGAACATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCG 1191762
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| |||||| || || |||||||| || |||| ||||| || ||| ||||| | ||
Sbjct 1191763 TCGGAGGCGGCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGG 1191822
Query 796270 GAGA---CCCAGT---GGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323
| |||| | |||| | ||| | || |||||||||||||||||||||||
Sbjct 1191823 GTCTTCTCCCAATCTCGGACATCCT--GCGAC-AGATCGACCTCCTCGGCGGTCCAAAAC 1191879
Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356
|||||||| ||||| |||||||||||||| |||
Sbjct 1191880 GAGGCCTCAGCCTTCTTGTACATCTCCCAGATC 1191912
Score = 104 bits (114), Expect = 4e-16
Identities = 160/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
||||| || || | | |||||||||||||||||| |||| |||||||||| ||||||
Sbjct 1191073 TACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCATC 1191132
Query 793968 CACGGGAACGGGTTGGCCGTCAG---GTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGG 794024
|| || || || ||| | ||| ||| |||||||||||| | ||||
Sbjct 1191133 CAATCAAATGGATT---CGTTACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAAC 1191189
Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCC 794084
|| || || ||||| || ||||| || | ||| ||| | ||||||||| | | |||
Sbjct 1191190 CGATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCG 1191249
Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
|| |||| |||| ||| ||||| ||||||| ||||| || ||
Sbjct 1191250 CATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTC 1191296
>seq6695
Length=6602074
Score = 197 bits (218), Expect = 2e-44
Identities = 241/325 (74%), Gaps = 8/325 (2%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
|||||||| || |||||||||||| | |||| | |||| ||| | || |||||
Sbjct 4468727 CCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGG-CATCAACCCCCGCTT 4468669
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|| |||||||| || || ||||||||||| ||||| ||||| || |||||| ||| ||
Sbjct 4468668 TTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAGGCGAA 4468609
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| ||| ||| | |||||| || | | || ||| || |||||| ||||| |||||
Sbjct 4468608 GGCGATGAGTCTCTCGGCGAAGCTTTG-AGACCC-----GTCGATCCATTTCATTGCCCA 4468555
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| ||| || | || || || |||||||| |||||||||||||| ||||
Sbjct 4468554 CTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCTCTC 4468495
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
|| ||||||| |||||| |||| ||| || ||| |||| |||||||| || ||
Sbjct 4468494 TTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCTCCGAGTGGATATTCTC 4468435
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
||| |||||||| ||||| || |||
Sbjct 4468434 GATCGCGATCTGAAAGCCGTAGAAG 4468410
Score = 127 bits (140), Expect = 3e-23
Identities = 171/234 (73%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| | || ||||| ||| |||||| || || |||||||| |||||| |||
Sbjct 4468403 GCCTCCGAGACCTGGACATCCGACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCG 4468344
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| ||| ||||| || ||||| ||||| |||| ||||| || || | ||| | ||
Sbjct 4468343 TCCGAGGCCGCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGG 4468284
Query 796270 GAGA---CCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324
| | |||| | | | | | | ||| | || |||||||||||||| |||||||| |
Sbjct 4468283 GTCATCTCCCAATCGCGAACATC-CTGCGAC-AGATCGACCTCCTCGGCAGTCCAAAATG 4468226
Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
| ||||||||||| |||||||||||||| ||| || |||| |||| || ||||
Sbjct 4468225 AAGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACA 4468172
Score = 107 bits (118), Expect = 3e-17
Identities = 169/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958
||||| ||||||||| || ||| |||||| ||||||||||| |||| ||||| |||
Sbjct 4469042 GCCTTCTGATACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATC 4468983
Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCA 794018
| ||||||||| || || || | | ||| ||| || |||| |||| |
Sbjct 4468982 AGCTCCATCCAATCAAATGGATTTGGCACACCGTACACCTTACCGTACCCAAGCGCACCC 4468923
Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078
||||| || || || || || || ||||| |||| ||| | | | |||||| || |
Sbjct 4468922 AGCAGCCGATCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACC 4468863
Query 794079 AGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATG 794138
| ||| ||||| | |||| || |||||| ||||||| |||||||| ||| || |
Sbjct 4468862 AACGCGCATGGCAGAGCGTCGCATACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACG 4468803
Query 794139 AT 794140
||
Sbjct 4468802 AT 4468801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914943418002311
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |