Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1104 199 6e-45 seq6695 197 2e-44 >seq1104 Length=4098138 Score = 199 bits (220), Expect = 6e-45 Identities = 241/324 (74%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| || |||||| ||||| | |||| | |||| ||| | |||||||| Sbjct 1191379 CCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGG-CATTAACCCGCGCTT 1191437 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || || ||||| ||||| ||||| ||||| || || ||| ||| || Sbjct 1191438 TTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCAGGCGAA 1191497 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||| | |||||| || | | || ||| || |||||| ||||||||||| Sbjct 1191498 GGCGATGAGTCTCTCGGCGAAGCTCTG-AGACCC-----GTCGATCCATTTCATCGCCCA 1191551 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || |||||| || || | || | || |||||||||||||| |||||||| |||| Sbjct 1191552 CTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGGTCTCTCTC 1191611 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||||| | ||||||||||| |||||| ||| |||| || |||||||| || Sbjct 1191612 CTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATCTCCGAATGGATGTTCTC 1191671 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 ||| |||||||||||||| || || Sbjct 1191672 GATCGCGATCTGGAAGCCGTAGAA 1191695 Score = 118 bits (130), Expect = 2e-20 Identities = 156/213 (73%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || || || || |||||| ||| || |||||||| ||| || ||| Sbjct 1191703 GCCTCCGCGACCTGAACATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCG 1191762 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| || || |||||||| || |||| ||||| || ||| ||||| | || Sbjct 1191763 TCGGAGGCGGCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGG 1191822 Query 796270 GAGA---CCCAGT---GGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 | |||| | |||| | ||| | || ||||||||||||||||||||||| Sbjct 1191823 GTCTTCTCCCAATCTCGGACATCCT--GCGAC-AGATCGACCTCCTCGGCGGTCCAAAAC 1191879 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 |||||||| ||||| |||||||||||||| ||| Sbjct 1191880 GAGGCCTCAGCCTTCTTGTACATCTCCCAGATC 1191912 Score = 104 bits (114), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | |||||||||||||||||| |||| |||||||||| |||||| Sbjct 1191073 TACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCATC 1191132 Query 793968 CACGGGAACGGGTTGGCCGTCAG---GTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGG 794024 || || || || ||| | ||| ||| |||||||||||| | |||| Sbjct 1191133 CAATCAAATGGATT---CGTTACACCGTACACCTTGCCGCACCCGAGCGCACCCAGCAAC 1191189 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCC 794084 || || || ||||| || ||||| || | ||| ||| | ||||||||| | | ||| Sbjct 1191190 CGATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCG 1191249 Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || |||| |||| ||| ||||| ||||||| ||||| || || Sbjct 1191250 CATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTC 1191296 >seq6695 Length=6602074 Score = 197 bits (218), Expect = 2e-44 Identities = 241/325 (74%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| || |||||||||||| | |||| | |||| ||| | || ||||| Sbjct 4468727 CCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGG-CATCAACCCCCGCTT 4468669 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || || ||||||||||| ||||| ||||| || |||||| ||| || Sbjct 4468668 TTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCAGGCGAA 4468609 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||| | |||||| || | | || ||| || |||||| ||||| ||||| Sbjct 4468608 GGCGATGAGTCTCTCGGCGAAGCTTTG-AGACCC-----GTCGATCCATTTCATTGCCCA 4468555 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| || | || || || |||||||| |||||||||||||| |||| Sbjct 4468554 CTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAGGTGGTCTCTCTC 4468495 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || ||||||| |||||| |||| ||| || ||| |||| |||||||| || || Sbjct 4468494 TTTCGCATCCTTGATGTAGGTATCGAGGAGTAGACTGTACATCTCCGAGTGGATATTCTC 4468435 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| |||||||| ||||| || ||| Sbjct 4468434 GATCGCGATCTGAAAGCCGTAGAAG 4468410 Score = 127 bits (140), Expect = 3e-23 Identities = 171/234 (73%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||| ||| |||||| || || |||||||| |||||| ||| Sbjct 4468403 GCCTCCGAGACCTGGACATCCGACATGAACCGAGAAGCGAGGTTCTCCAACACGATACCG 4468344 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||| || ||||| ||||| |||| ||||| || || | ||| | || Sbjct 4468343 TCCGAGGCCGCGAAGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGG 4468284 Query 796270 GAGA---CCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324 | | |||| | | | | | | ||| | || |||||||||||||| |||||||| | Sbjct 4468283 GTCATCTCCCAATCGCGAACATC-CTGCGAC-AGATCGACCTCCTCGGCAGTCCAAAATG 4468226 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | ||||||||||| |||||||||||||| ||| || |||| |||| || |||| Sbjct 4468225 AAGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGAAACA 4468172 Score = 107 bits (118), Expect = 3e-17 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| ||||||||| || ||| |||||| ||||||||||| |||| ||||| ||| Sbjct 4469042 GCCTTCTGATACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTAGCGATATC 4468983 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCA 794018 | ||||||||| || || || | | ||| ||| || |||| |||| | Sbjct 4468982 AGCTCCATCCAATCAAATGGATTTGGCACACCGTACACCTTACCGTACCCAAGCGCACCC 4468923 Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 ||||| || || || || || || ||||| |||| ||| | | | |||||| || | Sbjct 4468922 AGCAGCCGATCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACC 4468863 Query 794079 AGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATG 794138 | ||| ||||| | |||| || |||||| ||||||| |||||||| ||| || | Sbjct 4468862 AACGCGCATGGCAGAGCGTCGCATACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACG 4468803 Query 794139 AT 794140 || Sbjct 4468802 AT 4468801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914943418002311