Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq6695 93.3 3e-14
seq5186 87.8 1e-12
seq7521 86.0 5e-12
>seq1
Length=11827220
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||| || ||| | || ||||| ||||| ||| |||| ||| |||
Sbjct 5218874 ATGCAGATATTTGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 5218815
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || || ||||| || || || || | || ||| ||
Sbjct 5218814 -GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 5218756
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| ||||| ||||||||||| | | || |||||||||||||
Sbjct 5218755 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 5218696
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||| || ||||||||||| | ||| |||| | | ||||||| ||||
Sbjct 5218695 CATCCAGAAGGAGTCTACCCTTCACTTGGTCCTCCGTCTGCGAGGTGGAA 5218646
>seq6695
Length=6602074
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| |
Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || ||| |||||| || || ||||| | || ||| |||
Sbjct 804701 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 804760
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || ||||| | ||| || |||||||| ||||| | | || |||| |||||||||
Sbjct 804761 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 804820
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| |||||||| || || | ||| ||||
Sbjct 804821 ATCCAAAAGGAATCGACTCTCCACCTGGT 804849
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| |
Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || ||| |||||| || || ||||| | || ||| |||
Sbjct 809833 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 809892
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || ||||| | ||| || |||||||| ||||| | | || |||| |||||||||
Sbjct 809893 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 809952
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| |||||||| || || | ||| ||||
Sbjct 809953 ATCCAAAAGGAATCGACTCTCCACCTGGT 809981
>seq5186
Length=9353477
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || || ||||| | || ||||| || || || | || |||| |||
Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTC- 4546967
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | || ||| ||||| || || ||||| | ||| ||||||
Sbjct 4546968 CGACACGATCGAGAATGTCAAAACCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 4547027
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | || || ||||||||||| || | | ||| |||| || |||||
Sbjct 4547028 GCAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAA 4547087
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || |||||||| ||| |||| ||||| || | | || || ||||
Sbjct 4547088 TATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTCCGTGGAGGAA 4547137
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||| || || | || || || ||||| || | || |||| |||
Sbjct 7866026 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACGTTGGAGGTGGAGAGCTC- 7865968
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | || ||| ||||| || || || || | ||| ||| ||
Sbjct 7865967 CGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 7865908
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || || | ||| ||||| ||||||||||| | || | ||||| |||||
Sbjct 7865907 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGTACTCTTGCGGATTACAA 7865848
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||| || |||||||| || | ||| ||||||||
Sbjct 7865847 CATCCAGAAGGAGTCGACCCTCCACTTGGTGTTG 7865814
>seq7521
Length=6323785
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
|||||| || ||||| || || | || ||||| ||||| || | || ||| |||
Sbjct 4430479 AATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACTCTGGAGGTAGAGAGCTC 4430420
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
| || || ||| | | || ||| ||||||| || || || || | ||| ||| |
Sbjct 4430419 G-GACACAATCGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGACC 4430361
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||||||||| || | ||| || || ||||||||||||| | ||| | ||||| ||||
Sbjct 4430360 AGCAGAGACTCATCTTTGCAGGGAAGCAGCTGGAGGACGGAAGAACCCTAGCGGATTACA 4430301
Query 107734 ACATTCAAAAGGAGTCTAC 107752
| || || ||||| || ||
Sbjct 4430300 ATATCCAGAAGGAATCAAC 4430282
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| ||||| ||||| | || || || ||||| ||| | ||| ||| ||| |
Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || || ||| || || || ||||| | || ||| ||
Sbjct 4431102 -GACACCATTGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCGGACCA 4431044
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| || ||||| | ||| || |||||||| || || | | || |||| ||||||||
Sbjct 4431043 GCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACAA 4430984
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||| ||||||||||| || | ||| |||| | | ||| |||| ||
Sbjct 4430983 CATCCAAAAGGAGTCAACCCTCCACCTGGTTCTCCGGTTGAGAGGTGG 4430936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398817253801561
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |