Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq6695 93.3 3e-14 seq5186 87.8 1e-12 seq7521 86.0 5e-12 >seq1 Length=11827220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||| | || ||||| ||||| ||| |||| ||| ||| Sbjct 5218874 ATGCAGATATTTGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 5218815 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || || || | || ||| || Sbjct 5218814 -GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGGATCCCACCGGACCA 5218756 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | | || ||||||||||||| Sbjct 5218755 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 5218696 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || ||||||||||| | ||| |||| | | ||||||| |||| Sbjct 5218695 CATCCAGAAGGAGTCTACCCTTCACTTGGTCCTCCGTCTGCGAGGTGGAA 5218646 >seq6695 Length=6602074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| | Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || ||| |||||| || || ||||| | || ||| ||| Sbjct 804701 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 804760 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || |||||||| ||||| | | || |||| ||||||||| Sbjct 804761 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 804820 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || || | ||| |||| Sbjct 804821 ATCCAAAAGGAATCGACTCTCCACCTGGT 804849 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| || ||||| ||| | Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || ||| |||||| || || ||||| | || ||| ||| Sbjct 809833 GACACCATTGACAATGTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 809892 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || |||||||| ||||| | | || |||| ||||||||| Sbjct 809893 CAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAAC 809952 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || || | ||| |||| Sbjct 809953 ATCCAAAAGGAATCGACTCTCCACCTGGT 809981 >seq5186 Length=9353477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || ||||| | || ||||| || || || | || |||| ||| Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTC- 4546967 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || ||| ||||| || || ||||| | ||| |||||| Sbjct 4546968 CGACACGATCGAGAATGTCAAAACCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 4547027 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || ||||||||||| || | | ||| |||| || ||||| Sbjct 4547028 GCAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAA 4547087 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || |||||||| ||| |||| ||||| || | | || || |||| Sbjct 4547088 TATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTCCGTGGAGGAA 4547137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | || || || ||||| || | || |||| ||| Sbjct 7866026 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACGTTGGAGGTGGAGAGCTC- 7865968 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || || || | ||| ||| || Sbjct 7865967 CGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 7865908 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | || | ||||| ||||| Sbjct 7865907 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGTACTCTTGCGGATTACAA 7865848 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| || | ||| |||||||| Sbjct 7865847 CATCCAGAAGGAGTCGACCCTCCACTTGGTGTTG 7865814 >seq7521 Length=6323785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || ||||| || || | || ||||| ||||| || | || ||| ||| Sbjct 4430479 AATGCAGATCTTTGTGAAGACACTCACGGGCAAGACCATCACTCTGGAGGTAGAGAGCTC 4430420 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || ||| | | || ||| ||||||| || || || || | ||| ||| | Sbjct 4430419 G-GACACAATCGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGACC 4430361 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | ||| || || ||||||||||||| | ||| | ||||| |||| Sbjct 4430360 AGCAGAGACTCATCTTTGCAGGGAAGCAGCTGGAGGACGGAAGAACCCTAGCGGATTACA 4430301 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | || || ||||| || || Sbjct 4430300 ATATCCAGAAGGAATCAAC 4430282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || || || ||||| ||| | ||| ||| ||| | Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||| || || || ||||| | || ||| || Sbjct 4431102 -GACACCATTGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCGGACCA 4431044 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || |||||||| || || | | || |||| |||||||| Sbjct 4431043 GCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACAA 4430984 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||||||||| || | ||| |||| | | ||| |||| || Sbjct 4430983 CATCCAAAAGGAGTCAACCCTCCACCTGGTTCTCCGGTTGAGAGGTGG 4430936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398817253801561