Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7521 125 6e-24 seq6695 114 1e-20 seq1 114 1e-20 seq5186 109 4e-19 seq8189 91.5 1e-13 seq5760 91.5 1e-13 >seq7521 Length=6323785 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | |||||| || ||||| || || || || |||||||| | ||| | Sbjct 4430263 ACGGAGCACGAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCTAGGGTTCTTCC 4430322 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || || ||| | || | ||| ||||| ||||| ||||||||||| || Sbjct 4430323 GTCCTCCAGCTGCTTCCCTGCAAAGATGAGTCTCTGCTGGTCCGGGGGAATACCCTCCTT 4430382 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| ||| ||| | || | ||||| || ||||| || ||||| | Sbjct 4430383 GTCTTG-AATCTTTGCTTTCACATTGTCGATTGTGTCCGAGCTCTCTACCTCCAGAGTGA 4430441 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| || | || || ||||| ||||||||| Sbjct 4430442 TGGTCTTGCCCGTGAGTGTCTTCACAAAGATCTGCATT 4430479 >seq6695 Length=6602074 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| ||||| ||||| || ||||| || || |||| ||| || Sbjct 810900 ACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCTGCAAGGGTTCGTCC 810841 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||||||| | || | || ||||| ||||| || || || || || Sbjct 810840 ATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTT 810781 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | || ||| | || | || || || || ||||||||||||| Sbjct 810780 ATCCTG-AATCTTCGCCTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTTA 810722 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | ||| || ||||| |||||||| Sbjct 810721 TGGTTTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 810685 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || ||||||||||| || || || ||||| |||| ||| | Sbjct 810444 ACGAAGGACCAAATGGAGAGTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCC 810385 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| |||||||||||| | || | |||||||| ||||| || || || || || Sbjct 810384 GTCCTCGAGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTT 810325 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || | || | || ||||| || || || || || || Sbjct 810324 GTCCTGGATCTTTGCCTTCACGTTGTCAATGGTATCAGAGCTCTCAACCTCGAGGGTGAT 810265 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || || || |||||||| Sbjct 810264 CGTTTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 810229 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| || || |||||||| || || || || || || |||| ||| || Sbjct 810672 ACGGAGAACCAGGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTTCGTCC 810613 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||||||| | || | ||| || || ||||| || || || || || Sbjct 810612 ATCCTCCAGCTGTTTGCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTT 810553 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | ||| |||||| | || | |||||||| ||| || || || || || Sbjct 810552 ATCCTGGATCTTTGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGAT 810493 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | ||| || || || |||||||| Sbjct 810492 TGTTTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 810457 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || |||| || || || ||||| ||||| ||||| || || ||| Sbjct 805095 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 805036 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| ||||| || || |||||| | || | ||| || || || || || Sbjct 805035 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 804976 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| |||| || ||| | || | ||||| || ||| || Sbjct 804975 ATTCCTTCTTTGTCTTG-AATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 804917 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || | || || || || |||||||| Sbjct 804916 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || |||| || || || ||||| ||||| ||||| || || ||| Sbjct 810227 CCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCA 810168 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| ||||| || || |||||| | || | ||| || || || || || Sbjct 810167 AGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGG 810108 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| |||| || ||| | || | ||||| || ||| || Sbjct 810107 ATTCCTTCTTTGTCTTG-AATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAAC 810049 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || | || || || || |||||||| Sbjct 810048 CTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001 >seq1 Length=11827220 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||| || ||||| ||||| || || || || || ||||| || ||||| Sbjct 5218647 TCCACCTCGCAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 5218706 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || || ||| | |||| || ||||| ||||| || Sbjct 5218707 CAGGGTGCGGCCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGG 5218766 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || | || |||||| | || | |||||||| || || Sbjct 5218767 GATCCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGAC 5218826 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || |||||||||||||| Sbjct 5218827 CTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAATATCTGCAT 5218874 >seq5186 Length=9353477 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||||||||||| ||| ||||| || || || || || || ||||| || Sbjct 4547136 TCCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGC 4547077 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || || ||||| || || | |||| || ||||||||||| || Sbjct 4547076 CAGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGG 4547017 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || ||||| || | || ||||||| | || | ||||| || || || Sbjct 4547016 AATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCAC 4546957 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || ||||| || | |||||| || || || ||||| Sbjct 4546956 CTCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| || || || || || || || ||||| |||||||||| || ||| Sbjct 7865811 ACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCAAGAGTACGACC 7865870 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || ||| | |||| || ||||| ||||| ||||||||||| || Sbjct 7865871 ATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 7865930 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||| || | || | ||||| || || || || | || || Sbjct 7865931 GTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAACGTGAT 7865990 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || ||||| |||||||| Sbjct 7865991 GGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 7866026 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| || || | || || ||||||||||| || ||||| || || || Sbjct 4546907 CCTCCCCTGAGACGGAGGACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGCG 4546848 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | ||| || || || ||||||| || ||||||||||| ||| Sbjct 4546847 AGTGTTCGTCCATCCTCTAATTGCTTCCCCGCGAATATCAACCTCTGCTGATCCGGAGGA 4546788 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||||||| | || | ||||| || || || Sbjct 4546787 ATTCCTTCCTTGTCCTGGATCTTGGATTTGACATTCTCGATTGTGTCCGAGCTCTCAACC 4546728 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| | || || || || || ||||| Sbjct 4546727 TCGAGCGTGATGGTCTTTCCAGTAAGAGTCTTCACGAAGATTTGCAT 4546681 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || || || ||||| || ||||| || || || Sbjct 7866028 CCACCACGCAGACGGAGAACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGCC 7866087 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || || | |||| |||||||| ||||| ||| Sbjct 7866088 AGGGTGCGTCCATCCTCCAGCTGCTTCCCGGCGAAAATCAGCCTTTGCTGGTCCGGGGGA 7866147 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| |||||||| | || || || | || | ||||| || || || Sbjct 7866148 ATACCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCCACC 7866207 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | ||| || || || |||||||| Sbjct 7866208 TCGAGGGTAATAGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 7866254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || ||||| || || || ||||| || || |||| ||| ||| Sbjct 7866495 ACGAAGAACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGACC 7866554 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | |||| || ||||| ||||| |||||||||||||| Sbjct 7866555 ATCCTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTT 7866614 Query 29691 GTCTTG 29696 ||| || Sbjct 7866615 GTCCTG 7866620 >seq8189 Length=468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 |||||||| || || || || ||||| || || || | |||||| || || || ||| Sbjct 216 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGT 157 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || || | |||| | |||||||||||||| || || || ||||| || | || Sbjct 156 TTCCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTA 97 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | || || || ||| || || || ||||| || || || ||| Sbjct 96 GCCTTCACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTT 37 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||| || || |||||||| Sbjct 36 AGGGTTTTCACGAAGATCTGCAT 14 >seq5760 Length=2305957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 |||||||| || || || || ||||| || || || | |||||| || || || ||| Sbjct 1766428 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGT 1766369 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || || | |||| | |||||||||||||| || || || ||||| || | || Sbjct 1766368 TTCCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTA 1766309 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | || || || ||| || || || ||||| || || || ||| Sbjct 1766308 GCCTTCACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTT 1766249 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||| || || |||||||| Sbjct 1766248 AGGGTTTTCACGAAGATCTGCAT 1766226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385161692672109