Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5186 98.7 1e-15 seq6695 95.1 1e-14 >seq5186 Length=9353477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| || | ||| | || || || || || || |||||||| | Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| ||| ||||| || ||||| || || ||||||| | |||||||| || || Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | |||||| | | || || Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||||||| | ||||| ||||| |||||||| Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 >seq6695 Length=6602074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| || | ||| | || | || ||||| ||||| |||||||| ||| | Sbjct 804867 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 804808 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || ||||| || ||| |||| || | |||||| || ||||| Sbjct 804807 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGG 804748 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || ||| ||| | | || | ||||| | || ||| Sbjct 804747 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 804688 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | ||||| || ||||||||||| Sbjct 804687 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| || | ||| | || | || ||||| ||||| |||||||| ||| | Sbjct 809999 CCACCTCTTAACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCC 809940 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || ||||| || ||| |||| || | |||||| || ||||| Sbjct 809939 AAGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 809880 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || ||| ||| | | || | ||||| | || ||| Sbjct 809879 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACT 809820 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | ||||| || ||||||||||| Sbjct 809819 TCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| |||||||| || | || || |||||||| || |||||| Sbjct 805065 GTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCTTCGAGCTGCTTACCA 805006 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || || || ||||| || ||||||||||| ||| ||| ||| Sbjct 805005 GCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTT 804946 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| || || | || | ||| || ||||| | || Sbjct 804945 ACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCGGTAAGAGTC 804886 Query 137395 TTTACGAATATTTGCATA 137412 |||||||| || |||||| Sbjct 804885 TTTACGAAGATCTGCATA 804868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| |||||||| || | || || |||||||| || |||||| Sbjct 810197 GTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCTTCGAGCTGCTTACCA 810138 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || || || ||||| || ||||||||||| ||| ||| ||| Sbjct 810137 GCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATCTTTGCCTTT 810078 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| || || | || | ||| || ||||| | || Sbjct 810077 ACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTTTTACCGGTAAGAGTC 810018 Query 137395 TTTACGAATATTTGCATA 137412 |||||||| || |||||| Sbjct 810017 TTTACGAAGATCTGCATA 810000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488469197806800