Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10304 102 5e-17 seq6695 96.9 2e-15 seq7521 95.1 8e-15 seq8189 93.3 3e-14 seq5760 93.3 3e-14 seq5186 93.3 3e-14 >seq10304 Length=4769457 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | ||| ||||| |||| ||||| ||||| ||||| || Sbjct 685584 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAACTGTTTCCCGGCGAA 685525 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| || |||| | ||||| ||||| || || || | ||| Sbjct 685524 AATCAGCCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGA-CAT 685466 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || |||| || || || || || |||| ||||| | Sbjct 685465 TGTCGATGGTGTCGGAGGACTCGACTTCAAGGGTTATGGTCTTCCCCGTTAGTGTTTTCA 685406 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 685405 CGAAGATCTGCAT 685393 >seq6695 Length=6602074 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | |||| || ||||| || ||||| |||||||| || | Sbjct 805096 ACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGC 805037 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | || || || ||||| || | | ||| || ||| | || Sbjct 805036 AAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGG 804977 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || || | |||| ||| | ||||||| ||| | Sbjct 804976 GATTCCTTCTTTGTCTTGAATCTT-TGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAA 804918 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || | || ||||| |||||||||||| Sbjct 804917 CCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 804868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | |||| || ||||| || ||||| |||||||| || | Sbjct 810228 ACCACCTCTCAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGC 810169 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | || || || ||||| || | | ||| || ||| | || Sbjct 810168 AAGGGTCCTTCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGG 810109 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || || | |||| ||| | ||||||| ||| | Sbjct 810108 GATTCCTTCTTTGTCTTGAATCTT-TGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAA 810050 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || | || ||||| |||||||||||| Sbjct 810049 CCTCGAGGGTGATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCATA 810000 >seq7521 Length=6323785 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | |||| || || || ||| ||||| |||||||| |||| Sbjct 4430935 ACCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGC 4430994 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | |||||||||||||| || | | ||||| || | || Sbjct 4430995 CAAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGG 4431054 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | ||||| ||||| ||||| || | ||||| ||| | |||||| | | | || Sbjct 4431055 AATTCCTTCCTTGTCCTGGATTTT-TGCCTTAACATTGTCAATGGTGTC-CGAGCTCTCG 4431112 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | ||||| |||||||| ||||| Sbjct 4431113 ACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 >seq8189 Length=468 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | ||||| ||||| || Sbjct 205 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCCGGCGAA 146 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||||| |||| | ||||| ||||| || || ||| |||| Sbjct 145 GATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTC-ACAT 87 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || ||||| || || | || || || || || |||| ||||| | Sbjct 86 TGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCA 27 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 26 CGAAGATCTGCAT 14 >seq5760 Length=2305957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | ||||| ||||| || Sbjct 1766417 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCCGGCGAA 1766358 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||||| |||| | ||||| ||||| || || ||| |||| Sbjct 1766357 GATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTC-ACAT 1766299 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || ||||| || || | || || || || || |||| ||||| | Sbjct 1766298 TGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCA 1766239 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 1766238 CGAAGATCTGCAT 1766226 >seq5186 Length=9353477 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || || || ||| || || ||||||||||| | Sbjct 7865800 CCACCACGTAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGCA 7865859 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || |||||||| |||| | |||||| || | || Sbjct 7865860 AGAGTACGACCATCCTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 7865919 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || |||| || | ||| | ||||||| ||||| Sbjct 7865920 ATACCCTCCTTGTCCTGGATCTTGGCTTTC-ACGTTGTCGATGGTGTCGGAGCTCTCCAC 7865978 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || ||||| || | || || |||||||||||||| Sbjct 7865979 CTCCAACGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 7866026 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || |||||| || |||||||| || | Sbjct 7866711 ACCACCACGGAGACGAAGAACCAAATGGAGGGTTGACTCTTTCTGAATGTTGTAGTCAGC 7866770 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | |||| |||| ||| || || ||||| ||||| | |||||| ||| | || Sbjct 7866771 GAGGGTTCTGCCGTCCTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 7866830 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||||| || | || | ||| | |||||| || | Sbjct 7866831 AATCCCCTCCTTGTCCTGGATTTT-TGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGA 7866889 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || ||||| | || || || ||||||||||| Sbjct 7866890 CCTCAAGAGTGATTGTCTTGCCTGTGAGGGTCTTAACGAAGATCTGCAT 7866938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328654929526080