Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 105 6e-18
seq7521 87.8 2e-12
seq1104 84.2 2e-11
>seq6695
Length=6602074
Score = 105 bits (116), Expect = 6e-18
Identities = 352/531 (66%), Gaps = 20/531 (4%)
Strand=Plus/Plus
Query 46750 TCGAGCACGTGCCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808
||||| ||| || ||||| ||| || ||||| |||||||| ||||| |||||||| |
Sbjct 4468520 TCGAGACCGTCCCTTGCGT-CGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGA---C 4468575
Query 46809 GAGACCGCCACGCTG-GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttt 46867
| | | | | ||| |||||| | | | || ||||| |||||||| | || ||
Sbjct 4468576 GGGTCT-CAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTT 4468634
Query 46868 ttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGAC 46927
|| |||||||| ||| ||||||| | |||| || | |||||||| | ||
Sbjct 4468635 CTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCCGGGATTAAC 4468694
Query 46928 GTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTA 46987
||| ||||| ||||||||||| |||||||| || ||| || || |||||||||
Sbjct 4468695 TTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGTCTCCT 4468754
Query 46988 TTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGG 47046
||| | | | | | || | | | ||| | || || | || | | |
Sbjct 4468755 ATAC---AGTCTCCTCAGGACCAAGCTGACCGAGGAGCGCG-TCAAGTCAATCGTCCGCG 4468810
Query 47047 AGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGG 47104
| || || |||||| | ||||| | |||| || ||||| ||| ||| ||||
Sbjct 4468811 ACGCCGTCGACATCGAGAGAGAGTTCGT--ATGCGACGCTCTGCCATGCGCGTTGGTGGG 4468868
Query 47105 CATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG-TTGGTGC 47163
|||||| | | ||| || |||| || ||||||||||||||||| ||| | |||||
Sbjct 4468869 GATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGGCGGATCGGCTGCTGGGTGC 4468928
Query 47164 AGCTCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATT 47222
||| || || | || | | || | ||||| ||||| | ||| | ||
Sbjct 4468929 -GCTTGG-GTACGGTAAGGTGTACGGTGTGCCAAATCCATTTGATTGGATGGAGCTGATA 4468986
Query 47223 TCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG 47273
||||| |||| || ||||| || |||||||| || ||||| |||||| ||
Sbjct 4468987 TCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCGAGTATCAG 4469037
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| || | ||||| || | |||| || ||||| ||||||||||| | ||| |
Sbjct 805087 CAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCT 805028
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||||||||| ||||| | | |||| || | |||||| |||||||| || |||||
Sbjct 805027 TCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTC 804968
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || ||| ||| || | | || | || |||| || || |||| ||
Sbjct 804967 TTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGT 804908
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| ||||||||| || ||||| |||| ||| ||||||||
Sbjct 804907 GATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| || | ||||| || | |||| || ||||| ||||||||||| | ||| |
Sbjct 810219 CAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCT 810160
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||||||||| ||||| | | |||| || | |||||| |||||||| || |||||
Sbjct 810159 TCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTC 810100
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || ||| ||| || | | || | || |||| || || |||| ||
Sbjct 810099 TTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGT 810040
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| ||||||||| || ||||| |||| ||| ||||||||
Sbjct 810039 GATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001
>seq7521
Length=6323785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| || | ||||| || | | ||||||| ||||| |||||||||||| || ||| ||
Sbjct 4430944 CAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCG 4431003
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
||||||||||||||| |||| | |||| || | || || || ||||| || |||||
Sbjct 4431004 GCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTC 4431063
Query 132025 TTTATC 132030
|| ||
Sbjct 4431064 CTTGTC 4431069
>seq1104
Length=4098138
Score = 84.2 bits (92), Expect = 2e-11
Identities = 356/548 (65%), Gaps = 32/548 (6%)
Strand=Plus/Minus
Query 46750 TCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCG 46809
||||| | | || ||||| ||| ||||| |||||||| ||||| |||||||| ||
Sbjct 1191586 TCGAGACCATTCCTTGCGTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGA---CG 1191530
Query 46810 AGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttttt 46869
| | | | |||||| | | | || ||||| || ||||| | || || |
Sbjct 1191529 GGTCTCAGAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTCTTCT 1191470
Query 46870 CGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGT 46929
| ||||| || ||| || |||| | |||| || |||||||||| | || |
Sbjct 1191469 CCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTAACTT 1191410
Query 46930 TCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATT 46989
|| ||||||||||||||||| |||||||| || ||| || || ||||| ||| |
Sbjct 1191409 TCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGCCTCCTCT 1191350
Query 46990 ACAAGACGCGCGTGAATGAGAAATTAAACT--CGGACACGATCCTGA---GCATGTTTAG 47044
|| || | | | || || || || |||| | | ||| || | |
Sbjct 1191349 AC-AGTCTC------CTCAGGAA-CAAGCTCACGGAGGAGCGCGTGAAGTCAATCGTGCG 1191298
Query 47045 GGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTG 47102
|| || || |||||| | |||||| | ||||| ||||| || ||| ||| ||
Sbjct 1191297 TGACGCAGTCGACATCGAGAGGGAGTTCGT--CTGCGACGCGCTTCCATGCGCGTTGGTG 1191240
Query 47103 GGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG-TTGGT 47161
||||||||| | ||| | |||| || ||||| ||||||||||| || | |||
Sbjct 1191239 GGCATGAACCGTGACCTGATGGGTCAATACATCGAGTTCGTGGCGGATCGGTTGCTGGGT 1191180
Query 47162 GCAGCTCGGACAACCGAAATATTTTAATGCT----CGTAATCCGTTTGAGTTTATGAACA 47217
|| |||||| | | || | | | | | || ||||| ||||| | ||| |
Sbjct 1191179 GC-GCTCGG-GTGCGGCAAGGTGT--ACGGTGTAACG-AATCCATTTGATTGGATGGAAC 1191125
Query 47218 ACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG--CG 47275
|| ||||| |||| || ||||| ||||||||||| | || |||||||| || |
Sbjct 1191124 TGATCTCGCTGCAGGGGAAGACCAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGG 1191065
Query 47276 CTTCGGTG 47283
||||||||
Sbjct 1191064 CTTCGGTG 1191057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476538224867640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |