Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6695 105 6e-18 seq7521 87.8 2e-12 seq1104 84.2 2e-11 >seq6695 Length=6602074 Score = 105 bits (116), Expect = 6e-18 Identities = 352/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 46750 TCGAGCACGTGCCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808 ||||| ||| || ||||| ||| || ||||| |||||||| ||||| |||||||| | Sbjct 4468520 TCGAGACCGTCCCTTGCGT-CGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGA---C 4468575 Query 46809 GAGACCGCCACGCTG-GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttt 46867 | | | | | ||| |||||| | | | || ||||| |||||||| | || || Sbjct 4468576 GGGTCT-CAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTT 4468634 Query 46868 ttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGAC 46927 || |||||||| ||| ||||||| | |||| || | |||||||| | || Sbjct 4468635 CTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCCGGGATTAAC 4468694 Query 46928 GTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTA 46987 ||| ||||| ||||||||||| |||||||| || ||| || || ||||||||| Sbjct 4468695 TTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGTCTCCT 4468754 Query 46988 TTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGG 47046 ||| | | | | | || | | | ||| | || || | || | | | Sbjct 4468755 ATAC---AGTCTCCTCAGGACCAAGCTGACCGAGGAGCGCG-TCAAGTCAATCGTCCGCG 4468810 Query 47047 AGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGG 47104 | || || |||||| | ||||| | |||| || ||||| ||| ||| |||| Sbjct 4468811 ACGCCGTCGACATCGAGAGAGAGTTCGT--ATGCGACGCTCTGCCATGCGCGTTGGTGGG 4468868 Query 47105 CATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG-TTGGTGC 47163 |||||| | | ||| || |||| || ||||||||||||||||| ||| | ||||| Sbjct 4468869 GATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGGCGGATCGGCTGCTGGGTGC 4468928 Query 47164 AGCTCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATT 47222 ||| || || | || | | || | ||||| ||||| | ||| | || Sbjct 4468929 -GCTTGG-GTACGGTAAGGTGTACGGTGTGCCAAATCCATTTGATTGGATGGAGCTGATA 4468986 Query 47223 TCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG 47273 ||||| |||| || ||||| || |||||||| || ||||| |||||| || Sbjct 4468987 TCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCGAGTATCAG 4469037 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||| || | |||| || ||||| ||||||||||| | ||| | Sbjct 805087 CAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCT 805028 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||| ||||| | | |||| || | |||||| |||||||| || ||||| Sbjct 805027 TCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTC 804968 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||| ||| || | | || | || |||| || || |||| || Sbjct 804967 TTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGT 804908 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||| || ||||| |||| ||| |||||||| Sbjct 804907 GATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 804869 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||| || | |||| || ||||| ||||||||||| | ||| | Sbjct 810219 CAACCGGAGAACCAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGGGTCCT 810160 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||| ||||| | | |||| || | |||||| |||||||| || ||||| Sbjct 810159 TCCATCTTCGAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATTCCTTC 810100 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||| ||| || | | || | || |||| || || |||| || Sbjct 810099 TTTGTCTTGAATCTTTGCCTTTACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGT 810040 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||| || ||||| |||| ||| |||||||| Sbjct 810039 GATCGTTTTACCGGTAAGAGTCTTTACGAAGATCTGCAT 810001 >seq7521 Length=6323785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||| || | | ||||||| ||||| |||||||||||| || ||| || Sbjct 4430944 CAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCG 4431003 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||||||||||||| |||| | |||| || | || || || ||||| || ||||| Sbjct 4431004 GCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTC 4431063 Query 132025 TTTATC 132030 || || Sbjct 4431064 CTTGTC 4431069 >seq1104 Length=4098138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 356/548 (65%), Gaps = 32/548 (6%) Strand=Plus/Minus Query 46750 TCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCG 46809 ||||| | | || ||||| ||| ||||| |||||||| ||||| |||||||| || Sbjct 1191586 TCGAGACCATTCCTTGCGTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGA---CG 1191530 Query 46810 AGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttttt 46869 | | | | |||||| | | | || ||||| || ||||| | || || | Sbjct 1191529 GGTCTCAGAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTCTTCT 1191470 Query 46870 CGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGT 46929 | ||||| || ||| || |||| | |||| || |||||||||| | || | Sbjct 1191469 CCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTAACTT 1191410 Query 46930 TCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATT 46989 || ||||||||||||||||| |||||||| || ||| || || ||||| ||| | Sbjct 1191409 TCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGCCTCCTCT 1191350 Query 46990 ACAAGACGCGCGTGAATGAGAAATTAAACT--CGGACACGATCCTGA---GCATGTTTAG 47044 || || | | | || || || || |||| | | ||| || | | Sbjct 1191349 AC-AGTCTC------CTCAGGAA-CAAGCTCACGGAGGAGCGCGTGAAGTCAATCGTGCG 1191298 Query 47045 GGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTG 47102 || || || |||||| | |||||| | ||||| ||||| || ||| ||| || Sbjct 1191297 TGACGCAGTCGACATCGAGAGGGAGTTCGT--CTGCGACGCGCTTCCATGCGCGTTGGTG 1191240 Query 47103 GGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG-TTGGT 47161 ||||||||| | ||| | |||| || ||||| ||||||||||| || | ||| Sbjct 1191239 GGCATGAACCGTGACCTGATGGGTCAATACATCGAGTTCGTGGCGGATCGGTTGCTGGGT 1191180 Query 47162 GCAGCTCGGACAACCGAAATATTTTAATGCT----CGTAATCCGTTTGAGTTTATGAACA 47217 || |||||| | | || | | | | | || ||||| ||||| | ||| | Sbjct 1191179 GC-GCTCGG-GTGCGGCAAGGTGT--ACGGTGTAACG-AATCCATTTGATTGGATGGAAC 1191125 Query 47218 ACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG--CG 47275 || ||||| |||| || ||||| ||||||||||| | || |||||||| || | Sbjct 1191124 TGATCTCGCTGCAGGGGAAGACCAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGG 1191065 Query 47276 CTTCGGTG 47283 |||||||| Sbjct 1191064 CTTCGGTG 1191057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476538224867640