Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1104 282 6e-70 seq6695 280 2e-69 >seq1104 Length=4098138 Score = 282 bits (312), Expect = 6e-70 Identities = 370/505 (73%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||||| |||||| || ||||| |||||||| ||||||||||||||||||||||| | Sbjct 1191912 GATCTGGGAGATGTAC-AAGAAGGCTGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGATC 1191854 Query 1455835 TCGGCGCCGACACGGTCC---ACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCA 1455888 | | ||| | |||| | |||| | | |||| ||||| ||| || || |||| Sbjct 1191853 T-GTCGCAGGAT--GTCCGAGATTGGGAGAAGACCCTGAACGACGGCGAACGGCACTTCA 1191797 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 ||| || |||||||| || ||| |||||| ||| || || ||| |||||||| || Sbjct 1191796 TCACCCATGTCCTCGCTTTCTTT-GCCGCCTCCGACGGTATTGTGTTGGAGAACCTCGCT 1191738 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 ||| || ||| || || || | | ||||| ||| || ||||| ||||||||| Sbjct 1191737 TCCCGGTTCATGTCCGATGTTCAGGTCGCGGAGGCGCGTGCATTCTACGGCTTCCAGATC 1191678 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || ||||| |||||||| || || | ||| ||||| ||||||||||| | |||||| Sbjct 1191677 GCGATCGAGAACATCCATTCGGAGATGTACAGTCTCCTCCTCGACACCTACATAAAGGAC 1191618 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || |||| |||||||| |||||||||||||| || | || | || || ||| Sbjct 1191617 GCGAAGGAGAGAGACCACCTTTTTCGCGCCATCGAGACCATTCCTTGCGTCGCCAAGAAG 1191558 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 || | ||||||||||| |||||| || ||| ||| ||| |||||| | ||| Sbjct 1191557 GCACAGTGGGCGATGAAATGGATCGAC-----GGGTCTCAGAGCTTCGCCGAGAGACTCA 1191503 Query 1456189 TCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| ||| ||| |||| || || ||||| ||||| ||||| |||||||| || ||||||| Sbjct 1191502 TCGCCTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGCAGCTTCTGCGCGATATTTTGGC 1191443 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGG 1456272 | || |||||||| | ||||| || Sbjct 1191442 TGAAAAAGCGCGGGTTAATGCCGGG 1191418 Score = 86.0 bits (94), Expect = 9e-11 Identities = 199/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| || || || || || ||||||| | ||| ||||||| || || || | | Sbjct 1191374 CACTGCGATTTCGCGTGCCTCCTCTACAGTCTCCTCAGGAACAAGC--TC-ACGGAGGAG 1191318 Query 1456514 CCCAAGCAGATCATCGTC---GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | | || ||||| || || ||||| ||||||| ||||| ||| |||| || Sbjct 1191317 CGCGTGAAGTCAATCGTGCGTGACGCAGTCGACATCGAGAGGGAGTTCGTCTGCGACGCG 1191258 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || || ||| | | ||||||||| | ||| | ||| | || ||||| || || Sbjct 1191257 CTTCCATGCGCGTTGGTGGGCATGAACCGTGACC--TGATGGGTCAATACATCGAGTTC- 1191201 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || || || |||| | |||||||| ||||| ||| ||| | | || || Sbjct 1191200 GTGGCGGATCGGTTGCTGGGTGCGCTCGGGTGCGGC-AAGGTGTACGGTGTAACGAATCC 1191142 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || |||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1191141 ATTTGATTGGATGGAACTGATCTCGCTGCAGGGGAAGACCAACTTTTTCGAG 1191090 >seq6695 Length=6602074 Score = 280 bits (310), Expect = 2e-69 Identities = 408/566 (72%), Gaps = 18/566 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || |||| |||| | ||| ||||| |||||| || ||||||||||| || ||| Sbjct 4468172 TGTTTCCGATCCAATACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCTTCATTT 4468230 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGG---TGTCGCTGA 1455867 ||||| |||||||||||||| || | ||| | | | || | |||| || | |||| Sbjct 4468231 TGGACTGCCGAGGAGGTCGATCT-GTCGCAGG-ATGTTCGCGATTGGGAGATGACCCTGA 4468288 Query 1455868 GCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGC 1455927 ||| | || ||||| ||||||| ||||| ||||| || || ||| ||| || || Sbjct 4468289 ACGATGGTGAACGCCACTTCATCACCCACGTGCTCGCGTTCTT-CGCGGCCTCGGACGGT 4468347 Query 1455928 ATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGT 1455987 |||||| |||||||| || || || ||| || ||||| | | ||||| || Sbjct 4468348 ATCGTGTTGGAGAACCTCGCTTCTCGGTTCATGTCGGATGTCCAGGTCTCGGAGGCGCGC 4468407 Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || ||||| || |||||||| ||||| || |||||||| || | ||| || || Sbjct 4468408 GCCTTCTACGGCTTTCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTCTACTC 4468467 Query 1456048 ATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 |||| |||||| ||||||| || |||| |||||||||||||| |||||||| || Sbjct 4468468 CTCGATACCTACATCAAGGATGCGAAAGAGAGAGACCACCTCTTTCGTGCCATCGAGACC 4468527 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 || || | || ||| ||||| | ||||| ||||| |||||| || ||| ||| Sbjct 4468528 GTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATGGATCGAC-----GGGTCTC 4468582 Query 1456168 GACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCA 1456226 | ||| |||||| | ||| ||| ||| ||| ||||||| || ||||| ||||| |||| Sbjct 4468583 AAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGCA 4468642 Query 1456227 GTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC 1456286 |||||||||| || |||||||| || ||||| || | ||||| || | |||| | Sbjct 4468643 GTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCCGGG--ATTAACTTTCTC 4468700 Query 1456287 -AACGAATTTATCAGTCGCGACGAAG 1456311 |||||||| ||| || ||||||| Sbjct 4468701 GAACGAATTGATCTCGCGAGACGAAG 4468726 Score = 95.1 bits (104), Expect = 2e-13 Identities = 211/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| || || || ||||| || |||| | ||| | ||||| | ||||| | | Sbjct 4468732 CACTGCGATTTCGCGTGTCTCCTATACAGTCTCCTCAGGACCAAGCTG---ACCGAGGAG 4468788 Query 1456514 CCC---AAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | ||| ||| || ||| |||||||| ||||||| |||||| || |||| | Sbjct 4468789 CGCGTCAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGTATGCGACGCT 4468848 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||||| ||| | | || |||||| | || | ||| |||| ||||| || ||| Sbjct 4468849 CTGCCATGCGCGTTGGTGGGGATGAACCGTGACT--TGATGAGCCAATACATCGAGTTT- 4468905 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || || || ||||| | ||||| || | ||| ||| ||| | | | || || Sbjct 4468906 GTGGCGGATCGGCTGCTGGGTGCGCTTGGGTACGGT-AAGGTGTACGGTGTGCCAAATCC 4468964 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 || ||||||||| |||| ||||| |||| ||||||||||| |||||| || || Sbjct 4468965 ATTTGATTGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGT 4469024 Query 1456750 -GGCGAGTA 1456757 |||||||| Sbjct 4469025 CGGCGAGTA 4469033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176629761436338