Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq5510 91.5 2e-13 >seq5510 Length=2415207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 158838 GATCAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGT 158897 ||||||||||| || || || ||||| ||||||||||| || | ||| || || | Sbjct 935665 GATCAGTACATACTGGATGCAGCAGAGGAGGCAGGAGTCGAGCTGCCCTACTCTTGCAGG 935606 Query 158898 GCTGGTGCCTGTTCTTCCTGTGCTGGTAAACT--TGTCAGCGGAACTGTTGACCAAAGCG 158955 ||||| || ||||| ||||||| || || || |||| || ||||| |||||| | Sbjct 935605 GCTGGCGCATGTTCCACCTGTGCCGGGAAGCTAGCGTCA--GGCACTGTCGACCAATCTG 935548 Query 158956 ATCAGTCATTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTT 159015 | || ||| | || || ||| |||| | |||| | | |||| || ||||| ||| Sbjct 935547 ACGGCTCGTTCCTTGACGACAATCTCATTGAACAAGGTTATGTCCTGACCTGTGTGGCTT 935488 Query 159016 ATCCCACTTCTGATTGTGTGGTC 159038 ||||| || || |||||| || Sbjct 935487 ATCCCCAATCCGACTGTGTGATC 935465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572936262862800