Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6747 114 2e-20
seq1104 111 2e-19
seq3309 102 1e-16
>seq6747
Length=1176643
Score = 114 bits (126), Expect = 2e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | ||| | ||||| | ||| | || | |||||| |||| || ||
Sbjct 665443 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACGATTCC 665384
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| || ||| |||||||| | || || || || || |||
Sbjct 665383 ATTAGATGTCCCATTTGTACCCCGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 665324
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| |||||| || || || ||| || | |||||| ||||| |||||||||||
Sbjct 665323 AACACCTATGCCACCAGCTGATTTGCTAATAACAGCACATTCTTTCAGCGTGTCATATAT 665264
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|||||| ||||| |||||| ||||| | | ||| ||||||
Sbjct 665263 ACCCTCAATGCTGTCATCTTTCATGCAGATCAAAAAGCAGCTA 665221
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||| | ||||| ||||| ||||| | || ||||| || ||||| ||| |||| ||
Sbjct 665902 CTCTCTCTCATAATGTGTGTATAGTCTCTCAAATTCCTCACCCCAGCAATCTGCCAAACC 665843
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608
|||| |||| | || || | ||||||||||| ||||| | ||| | | ||| ||
Sbjct 665842 AGGAGCTTCACTGGGGCAAAACAATGACCACAGCCCATCAGTTTGAACCCTCTCCATGAA 665783
Query 69609 TAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659
||||| |||| |||||| || ||| || || || || | |||| ||||||
Sbjct 665782 AAGATCAGGAACCCAAAGCGC-ATAGAACAGGTCCCTAGCCCTATGTTCTTC 665732
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| ||||| || | || ||||| || |||||||||||| | | || | || || |
Sbjct 665112 GTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCTCTGGGACATCAAATGG 665053
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||| || || || || ||||| || || || |||| || || | ||||| |
Sbjct 665052 TACGTTCTGATTGCAGAATCGATATCATCCTTGTGGATGCCTACAGCAACTCTCATCAGC 664993
Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168
|| || ||||| | ||| || | ||| | | | ||| | ||||| ||| | || |
Sbjct 664992 ATGTGTTGAGGCCTTTCAACAACCTTTCCT--TGGACTTTAAGGAGGTAGGATCTCTCAA 664935
Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
| |||||||| ||||| |||| ||| ||| || | ||||| || ||
Sbjct 664934 GTGTTTTAAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATTAT 664886
>seq1104
Length=4098138
Score = 111 bits (122), Expect = 2e-19
Identities = 380/589 (65%), Gaps = 5/589 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| ||||| || || || ||||| || |||| || || ||||| || || || |
Sbjct 1191357 GCACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAA 1191416
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734
||| ||||||| || |||||||| ||||||||||| || ||| ||| | || || ||||
Sbjct 1191417 TCCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGC-GCAGAAGCTGCCGGAGAAGA 1191475
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA 39794
|||| ||||| || || || || | |||||||| || | || | | |
Sbjct 1191476 AGATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTCGA 1191535
Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854
|||| ||| ||||| | || ||||| || ||||| || || || || || ||
Sbjct 1191536 TCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAA 1191595
Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914
| || | | | | || | || || | || || || | | ||||| ||||| |
Sbjct 1191596 AAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATCT 1191655
Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974
| ||||||||||| || ||||| ||||| || ||||| || | || || | | |
Sbjct 1191656 CCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCT 1191715
Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034
| || || || || | || | || || ||| || || || |||||||
Sbjct 1191716 GAACATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAA 1191775
Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGT 40091
| || || | ||||| | || || | ||| || ||| || | ||| |
Sbjct 1191776 AGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAAT 1191835
Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151
| || ||| | || | ||| || || || || ||||||||||| ||||| ||||| |
Sbjct 1191836 CTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTTCT 1191895
Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200
||||||| | ||| || | | || |||| || || || ||| |||||
Sbjct 1191896 TGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944
>seq3309
Length=3363706
Score = 102 bits (112), Expect = 1e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||| | || | ||||| | ||| | || | ||||| |||| ||||||
Sbjct 2883797 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGAAGCATAGGAACAATACC 2883856
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||| | ||||| || ||| ||| |||||||| |||| || ||||| || ||
Sbjct 2883857 GTTAGATGTCCCATTCGTGCCACGAATGTAACTTCCAGTTGCACGGATATTGTGAACTGA 2883916
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| |||||| || || || ||| || | ||||| ||||| |||||||||||
Sbjct 2883917 AACACCTATACCACCAGCTGATTTGCTAATAACGGCACATTCTTTCAGGGTGTCATATAT 2883976
Query 69930 ACCCTCTATGCTATCATCTATCAT 69953
||||| ||||| |||||| ||||
Sbjct 2883977 GCCCTCAATGCTGTCATCTTTCAT 2884000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686803625676360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |