Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6747 114 2e-20 seq1104 111 2e-19 seq3309 102 1e-16 >seq6747 Length=1176643 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | ||| | || | |||||| |||| || || Sbjct 665443 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACGATTCC 665384 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| || ||| |||||||| | || || || || || ||| Sbjct 665383 ATTAGATGTCCCATTTGTACCCCGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 665324 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | |||||| || || || ||| || | |||||| ||||| ||||||||||| Sbjct 665323 AACACCTATGCCACCAGCTGATTTGCTAATAACAGCACATTCTTTCAGCGTGTCATATAT 665264 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||| ||||| |||||| ||||| | | ||| |||||| Sbjct 665263 ACCCTCAATGCTGTCATCTTTCATGCAGATCAAAAAGCAGCTA 665221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| | ||||| ||||| ||||| | || ||||| || ||||| ||| |||| || Sbjct 665902 CTCTCTCTCATAATGTGTGTATAGTCTCTCAAATTCCTCACCCCAGCAATCTGCCAAACC 665843 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 |||| |||| | || || | ||||||||||| ||||| | ||| | | ||| || Sbjct 665842 AGGAGCTTCACTGGGGCAAAACAATGACCACAGCCCATCAGTTTGAACCCTCTCCATGAA 665783 Query 69609 TAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| |||| |||||| || ||| || || || || | |||| |||||| Sbjct 665782 AAGATCAGGAACCCAAAGCGC-ATAGAACAGGTCCCTAGCCCTATGTTCTTC 665732 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || |||||||||||| | | || | || || | Sbjct 665112 GTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCTCTGGGACATCAAATGG 665053 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||| || || || || ||||| || || || |||| || || | ||||| | Sbjct 665052 TACGTTCTGATTGCAGAATCGATATCATCCTTGTGGATGCCTACAGCAACTCTCATCAGC 664993 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || || ||||| | ||| || | ||| | | | ||| | ||||| ||| | || | Sbjct 664992 ATGTGTTGAGGCCTTTCAACAACCTTTCCT--TGGACTTTAAGGAGGTAGGATCTCTCAA 664935 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 | |||||||| ||||| |||| ||| ||| || | ||||| || || Sbjct 664934 GTGTTTTAAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATTAT 664886 >seq1104 Length=4098138 Score = 111 bits (122), Expect = 2e-19 Identities = 380/589 (65%), Gaps = 5/589 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| ||||| || || || ||||| || |||| || || ||||| || || || | Sbjct 1191357 GCACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAA 1191416 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 ||| ||||||| || |||||||| ||||||||||| || ||| ||| | || || |||| Sbjct 1191417 TCCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGC-GCAGAAGCTGCCGGAGAAGA 1191475 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA 39794 |||| ||||| || || || || | |||||||| || | || | | | Sbjct 1191476 AGATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTCGA 1191535 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| ||| ||||| | || ||||| || ||||| || || || || || || Sbjct 1191536 TCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAA 1191595 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | || | | | | || | || || | || || || | | ||||| ||||| | Sbjct 1191596 AAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATCT 1191655 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | ||||||||||| || ||||| ||||| || ||||| || | || || | | | Sbjct 1191656 CCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCT 1191715 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | || || || || | || | || || ||| || || || ||||||| Sbjct 1191716 GAACATCGGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAA 1191775 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGT 40091 | || || | ||||| | || || | ||| || ||| || | ||| | Sbjct 1191776 AGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAAT 1191835 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | || ||| | || | ||| || || || || ||||||||||| ||||| ||||| | Sbjct 1191836 CTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTTCT 1191895 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 ||||||| | ||| || | | || |||| || || || ||| ||||| Sbjct 1191896 TGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq3309 Length=3363706 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | ||||| |||| |||||| Sbjct 2883797 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGAAGCATAGGAACAATACC 2883856 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | ||||| || ||| ||| |||||||| |||| || ||||| || || Sbjct 2883857 GTTAGATGTCCCATTCGTGCCACGAATGTAACTTCCAGTTGCACGGATATTGTGAACTGA 2883916 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | |||||| || || || ||| || | ||||| ||||| ||||||||||| Sbjct 2883917 AACACCTATACCACCAGCTGATTTGCTAATAACGGCACATTCTTTCAGGGTGTCATATAT 2883976 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||||| ||||| |||||| |||| Sbjct 2883977 GCCCTCAATGCTGTCATCTTTCAT 2884000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686803625676360