Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8189 113 4e-20 seq5760 113 4e-20 seq5186 104 2e-17 seq6636 89.7 4e-13 seq6695 87.8 2e-12 seq7521 86.0 5e-12 >seq8189 Length=468 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| | | |||| ||||||| |||||||| || Sbjct 211 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCC 152 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || || ||||| ||||||||||| | || || || || |||||| || Sbjct 151 GGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTT 92 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | || || | || ||| || ||||| ||||| | || ||||| || || Sbjct 91 CACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 32 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 |||||| ||||| ||||| ||||| Sbjct 31 TTTCACGAAGATCTGCATCTCTGCT 7 >seq5760 Length=2305957 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| | | |||| ||||||| |||||||| || Sbjct 1766423 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCC 1766364 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || || ||||| ||||||||||| | || || || || |||||| || Sbjct 1766363 GGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTT 1766304 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | || || | || ||| || ||||| ||||| | || ||||| || || Sbjct 1766303 CACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 1766244 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 |||||| ||||| ||||| ||||| Sbjct 1766243 TTTCACGAAGATCTGCATCTCTGCT 1766219 >seq5186 Length=9353477 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | ||| || || || || |||||||| || | Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| |||||| | || || | ||| |||||||| || Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| |||| | | || | ||||| | | || || Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| || || |||||||| ||||||||||| Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||| ||| || | || | ||||||||||| || ||| Sbjct 4547333 GTCGACTCTTTCTGTATATTGTAATCGGACAGAGTTCGTCCATCTTCGAGCTGCTTTCCG 4547274 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | |||||| || |||| | ||||| || || ||||| ||| Sbjct 4547273 GCGAATATCAGCCTCTGTTGGTCGGGCGAGATTCCCTCCTTGTCCTGAATCTTCGACTTC 4547214 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | |||||| || || ||||| | ||| || || || || Sbjct 4547213 ACGTTCTCGATCGTGTCCGAGCTTTCAACCTCCAGTGTTATGGTTTTTCCGGTGAGGGTC 4547154 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 4547153 TTCACGAAAATCTGCAT 4547137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | | || | || || Sbjct 7866502 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGACCATCCTCA 7866561 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || || | ||| || ||||| || | ||||||||| || | Sbjct 7866562 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGG 7866621 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | ||||| || | || || | || Sbjct 7866622 ATCTTGGCCTTTACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAACGTGATCGTCTTA 7866681 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || || || |||||||||||| Sbjct 7866682 CCCGTGAGGGTCTTGACGAAGATTTGCATA 7866711 >seq6636 Length=1297912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || || || || ||||||||| | | || |||| || Sbjct 787835 ACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTCC 787894 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || | ||||| || |||||||| | || || || || Sbjct 787895 AGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGA 787954 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | || | ||||| | || || || ||||| ||||||| || Sbjct 787955 ATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTTC 788014 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||||||||| || ||||| Sbjct 788015 CCCGTAAGGGTTTTCACAAAAATCTGCAT 788043 >seq6695 Length=6602074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 ||||| | |||| || | || || || ||||| || ||||||||| || | |||| Sbjct 804858 AACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGG 804799 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | || || |||||||| ||||| | || || | || || ||||| || | || || Sbjct 804798 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCC 804739 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || |||||| ||| | | || | ||||| | |||||||| ||||| Sbjct 804738 TTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTG 804679 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| || || ||||||||||| |||||||| Sbjct 804678 ATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 ||||| | |||| || | || || || ||||| || ||||||||| || | |||| Sbjct 809990 AACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGG 809931 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | || || |||||||| ||||| | || || | || || ||||| || | || || Sbjct 809930 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCC 809871 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || |||||| ||| | | || | ||||| | |||||||| ||||| Sbjct 809870 TTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTG 809811 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||||| || || ||||||||||| |||||||| Sbjct 809810 ATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773 >seq7521 Length=6323785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | |||| || | || || || ||||| || ||||||||| | Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | |||||||||||||| ||||| | || || | || || ||||| || Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||| || || | | || | ||||| | | || ||| Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || |||||||||||||||||||| Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424870963800888