Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq8189 113 4e-20
seq5760 113 4e-20
seq5186 104 2e-17
seq6636 89.7 4e-13
seq6695 87.8 2e-12
seq7521 86.0 5e-12
>seq8189
Length=468
Score = 113 bits (124), Expect = 4e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || || || || ||||||||| | | |||| ||||||| |||||||| ||
Sbjct 211 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCC 152
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | || || ||||| ||||||||||| | || || || || |||||| ||
Sbjct 151 GGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTT 92
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
|| | || | || || | || ||| || ||||| ||||| | || ||||| || ||
Sbjct 91 CACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 32
Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254
|||||| ||||| ||||| |||||
Sbjct 31 TTTCACGAAGATCTGCATCTCTGCT 7
>seq5760
Length=2305957
Score = 113 bits (124), Expect = 4e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || || || || ||||||||| | | |||| ||||||| |||||||| ||
Sbjct 1766423 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTCCC 1766364
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | || || ||||| ||||||||||| | || || || || |||||| ||
Sbjct 1766363 GGCGAAGATCAGGCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTAGCCTT 1766304
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
|| | || | || || | || ||| || ||||| ||||| | || ||||| || ||
Sbjct 1766303 CACATTGTCGATGGTATCCGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGT 1766244
Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254
|||||| ||||| ||||| |||||
Sbjct 1766243 TTTCACGAAGATCTGCATCTCTGCT 1766219
>seq5186
Length=9353477
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | |||| |||| ||| | ||| || || || || |||||||| || |
Sbjct 4547135 CCTCCACGGAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCC 4547076
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | | ||||| |||||||| |||||| | || || | ||| |||||||| ||
Sbjct 4547075 AGTGTCCTCCCATCTTCCAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGA 4547016
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || ||||||| |||| | | || | ||||| | | || ||
Sbjct 4547015 ATCCCTTCCTTGTCCTGGATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACC 4546956
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | ||||| || || |||||||| |||||||||||
Sbjct 4546955 TCCAGAGTGATCGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4546909
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| || |||||||| ||| || | || | ||||||||||| || |||
Sbjct 4547333 GTCGACTCTTTCTGTATATTGTAATCGGACAGAGTTCGTCCATCTTCGAGCTGCTTTCCG 4547274
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || | |||||| || |||| | ||||| || || ||||| |||
Sbjct 4547273 GCGAATATCAGCCTCTGTTGGTCGGGCGAGATTCCCTCCTTGTCCTGAATCTTCGACTTC 4547214
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | |||||| || || ||||| | ||| || || || ||
Sbjct 4547213 ACGTTCTCGATCGTGTCCGAGCTTTCAACCTCCAGTGTTATGGTTTTTCCGGTGAGGGTC 4547154
Query 27231 TTCACAAAGATTTGCAT 27247
||||| || || |||||
Sbjct 4547153 TTCACGAAAATCTGCAT 4547137
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || || || || || |||||||| | | | || | || ||
Sbjct 7866502 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGACCATCCTCA 7866561
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || |||||| | || || | ||| || ||||| || | ||||||||| || |
Sbjct 7866562 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGG 7866621
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| | | ||||| || | || || | ||
Sbjct 7866622 ATCTTGGCCTTTACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAACGTGATCGTCTTA 7866681
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||||| || || || || ||||||||||||
Sbjct 7866682 CCCGTGAGGGTCTTGACGAAGATTTGCATA 7866711
>seq6636
Length=1297912
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||| || || || || || ||||||||| | | || |||| ||
Sbjct 787835 ACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGACCGTCCTCC 787894
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || || |||||| | || | ||||| || |||||||| | || || || ||
Sbjct 787895 AGTTGCTTCCCGGCGAAGATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGA 787954
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| |||| | || | ||||| | || || || ||||| ||||||| ||
Sbjct 787955 ATCTTGGCCTTCACATTGTCGATCGTGTCGGAGGACTCGACCTCTAGGGTTATAGTCTTC 788014
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| || ||||||||||| || |||||
Sbjct 788015 CCCGTAAGGGTTTTCACAAAAATCTGCAT 788043
>seq6695
Length=6602074
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089
||||| | |||| || | || || || ||||| || ||||||||| || | ||||
Sbjct 804858 AACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGG 804799
Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149
| || || |||||||| ||||| | || || | || || ||||| || | || ||
Sbjct 804798 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCC 804739
Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209
|| || |||||| ||| | | || | ||||| | |||||||| |||||
Sbjct 804738 TTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTG 804679
Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | ||||| || || ||||||||||| ||||||||
Sbjct 804678 ATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 804641
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089
||||| | |||| || | || || || ||||| || ||||||||| || | ||||
Sbjct 809990 AACCGGAGAACCAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGG 809931
Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149
| || || |||||||| ||||| | || || | || || ||||| || | || ||
Sbjct 809930 CCATCCTCAAGCTGTTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGAATTCCTTCC 809871
Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209
|| || |||||| ||| | | || | ||||| | |||||||| |||||
Sbjct 809870 TTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCCGAACTCTCAACTTCGAGAGTG 809811
Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | ||||| || || ||||||||||| ||||||||
Sbjct 809810 ATGGTCTTGCCGGTGAGGGTTTTCACAAATATTTGCAT 809773
>seq7521
Length=6323785
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | |||||| | |||| || | || || || ||||| || ||||||||| |
Sbjct 4430936 CCACCTCTCAACCGGAGAACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCC 4430995
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | |||||||||||||| ||||| | || || | || || ||||| ||
Sbjct 4430996 AAGGTGCGGCCATCTTCGAGCTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGGA 4431055
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || ||| || || | | || | ||||| | | || |||
Sbjct 4431056 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATGGTGTCCGAGCTCTCGACT 4431115
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | || || || || ||||||||||||||||||||
Sbjct 4431116 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACAAAGATTTGCAT 4431162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424870963800888
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