Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6695 120 4e-22 seq7521 111 2e-19 seq555 102 1e-16 seq1104 93.3 5e-14 >seq6695 Length=6602074 Score = 120 bits (132), Expect = 4e-22 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || || ||||| || || | ||| || ||||| || || ||||| | || Sbjct 4468734 GTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGGCATCAACCC 4468675 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||| || | |||| |||| |||||||| |||||||||||||| || || || || Sbjct 4468674 CCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCCTTCGACGCA 4468615 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || | ||||||||| ||||| | || | |||||||||||| Sbjct 4468614 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCATTTCATTGC 4468558 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||| | |||||||||| | | || || || || | |||||| Sbjct 4468557 CCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGC 4468516 >seq7521 Length=6323785 Score = 111 bits (122), Expect = 2e-19 Identities = 292/442 (66%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || || || ||||| || | || || || | | || || || ||||||||||| || Sbjct 1637345 TTTGTAGCTGCAATCACGATGATACCGGTATTACCCTCGAAACCGTCCATCTCGGTCAGG 1637404 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACC---ACCAGCACTGCGT 11617 | || |||| || |||||||| || ||||| || ||| ||||| | | | Sbjct 1637405 AGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCTCC---ACCGATACCAGTTCCTCTT 1637461 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || || || || ||||| | ||||| || ||||| |||||| ||| Sbjct 1637462 TGCCTACCGACAGCGTCTATTTCATCCACAAAGACGATGCATGGAGCATTTTCCTTGGCT 1637521 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | |||||||| || ||||| |||||| ||||| ||||||||||||||||| | Sbjct 1637522 TTCTTGAAGAGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCCACAAACTCG 1637581 Query 11738 GCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | | ||| || || |||||| | |||||| || || ||| || || || Sbjct 1637582 GAACCCGAGATGGAGAAAAAAGGGACACCAGCTTCACCGGCAATTGCTTTTGCCAGAAGC 1637641 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTT 11857 |||||||| ||||| || ||| | || || | ||| || ||| |||| || Sbjct 1637642 GTCTTTCCGGTACCAGGAGGACCGACAAGGAGAACACCTTTAGGAATCCTGGCGCCGACC 1637701 Query 11858 CCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC-AATCTCTTCAAGTTCATCTTTGGC 11916 || ||||||| || | ||| ||||| || || | | | | ||| || | ||||| Sbjct 1637702 GCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGACTACTTCCATGAAG-TCTTGCTTGGC 1637760 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | |||| || |||||||| Sbjct 1637761 TTCATCAACTCCGGCAACATCA 1637782 >seq555 Length=388411 Score = 102 bits (112), Expect = 1e-16 Identities = 189/274 (69%), Gaps = 15/274 (5%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| || | || |||||||| || || |||||||||||||| || Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||||| || |||| || | ||||| | ||| | |||||| ||||| || Sbjct 76956 CATGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAAC 77011 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| || || | ||||||||| | | || | ||| || ||| || || | ||| Sbjct 77012 ACCCACGAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAAGGGCACTCCCGCTTC 77071 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 || || | ||||| || | ||||| |||||| Sbjct 77072 CCCTGCCACTGCTCGAGCCAATAGGGT-TTTCCC 77104 >seq1104 Length=4098138 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || || ||||| || || | || || ||||| || || ||||| | || Sbjct 1191372 GTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATTAACCC 1191431 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| |||| |||| | || |||||||| |||||||||||||| || || || || Sbjct 1191432 GCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCAACGCA 1191491 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || | ||||||||| ||||| | || | ||||||||| || Sbjct 1191492 GGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTCATCGC 1191548 Query 122850 CCATTTCGCCTTCTT 122864 ||| | |||||||| Sbjct 1191549 CCACTGTGCCTTCTT 1191563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627935840450400