Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6695 149 8e-31 seq1104 140 4e-28 seq6273 122 1e-22 seq7521 105 8e-18 >seq6695 Length=6602074 Score = 149 bits (164), Expect = 8e-31 Identities = 535/821 (65%), Gaps = 32/821 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 129784 ||| || || |||||||||||||||||||| |||||||| | | || ||||| |||| Sbjct 4469034 ATACTCGCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGTA-GC-GATATCAGCTCC 4468977 Query 129785 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGA 129842 || |||||||||| || | | || | || | | |||| | || | Sbjct 4468976 ATCCAATCAAATGGATT--TGGCACACCGTACACCTTACCGTACCCAAGCGCACCCAGCA 4468919 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | ||||||| || |||| ||||| | |||| || |||||| || | | Sbjct 4468918 GCCGATCCGCCACAAACTCGATGTATTGGCTCATCAAGTCACGGTTCATCCCCACCAACG 4468859 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 ||||| || ||||| | | |||| | |||| ||||| || || || || ||||| | Sbjct 4468858 CGCATGGCAGAGCGTCGCATACGAACTCTCTCTCGATGTCGACGGCGTCGCGGACGATTG 4468799 Query 129963 CGTGAATGGTCTCC---GT--GCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGC 130017 | | | |||| || || |||| || | | | | | | ||| |||| Sbjct 4468798 ACTTGACGCGCTCCTCGGTCAGCTTGGTCC--TGAGGAGACTGTATAGGAGA--CACGCG 4468743 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || |||||| || ||||| || ||||| | ||| |||||||| | || || Sbjct 4468742 AAA-TCGCAGTGGAGGCCTTCGTCTCGCGAGATCAATTCGTTCGAGAAAGTTAATCCCGG 4468684 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| | |||||||| || | ||| |||||||| || || ||| |||||||||||||| Sbjct 4468683 CATCAACCCCCGCTTTTTTAGCCAAAAAATCGCGCAGAAACTGCCGGAGAAGAAGATCCC 4468624 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 || || || ||||| || | ||| | ||| || ||| | ||| || | ||| Sbjct 4468623 TTCGACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTTTGAGAC---CCGTCGATCCA 4468567 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||||| |||||||||||||| ||| ||| || |||||||||| ||| || |||||| Sbjct 4468566 TTTCATTGCCCACTGCGCCTTCTTCGCGACGCAAGGGACGGTCTCGATGGCACGAAAGAG 4468507 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 | | | ||| | ||| |||||||| |||| | ||| | || | | || || Sbjct 4468506 GTGGTCTCTCTCTTTCGCATCCTTGATGTAGGTATCGAGGAG--TAGACTGTACATCTCC 4468449 Query 130318 --ATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 130375 |||| | || | | |||| | ||||||| | |||||| || | ||| Sbjct 4468448 GAGTGGATATTCTCGATCGCGATCTGAAAGCCGTAGAAGGCGCGCGCCTCCGAGACCTGG 4468389 Query 130376 ACCTC--ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433 || || | || || | || ||||| || || || || || || | || | Sbjct 4468388 ACATCCGACATG--AACCGAGAAGCGAGGTTCTCCAACACGATACCGTCCGAGGCCGCGA 4468331 Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGG---TCTTCCAGT 130490 | ||||| || | | | ||||| | ||||| |||||||||| ||| ||| | Sbjct 4468330 AGAACGCGAGCACGTGGGTGATGAAGTGGCGTTCACCATCGTTCAGGGTCATCTCCCAAT 4468271 Query 130491 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 130531 || || ||||| ||| ||||| |||||||| ||||||||| Sbjct 4468270 CGCGAACATCCTGCGACAGATCGACCTCCTCGGCAGTCCAA 4468230 >seq1104 Length=4098138 Score = 140 bits (154), Expect = 4e-28 Identities = 567/876 (65%), Gaps = 28/876 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||||| ||||||||| ||||| |||||||| | || ||| ||||| Sbjct 1191073 TACTCTCCAACCCTCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGCGAGATCAGTTCCATC 1191132 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 |||||||||| ||| || | || |||| | ||| || | | || | | Sbjct 1191133 CAATCAAATGGATTCGTTACACCGTACACCTTGCCG-CAC-CCGAGCGCACCCAGCAACC 1191190 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||||| ||| |||| ||||| | | |||| || |||||| || | | | Sbjct 1191191 GATCCGCCACGAACTCGATGTATTGACCCATCAGGTCACGGTTCATGCCCACCAACGCGC 1191250 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||| |||||||| ||| |||| || |||| ||||| || || || |||||||| | | Sbjct 1191251 ATGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACTGCGTCACGCACGATTGACT 1191310 Query 129966 GAATGGTCTCC---GTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 | | |||| ||| | || | || | | | | | || ||| |||| ||| Sbjct 1191311 TCACGCGCTCCTCCGTGAGCTTGT-TCCTGAGGAGACTGTAGAGGAGG--CACGCGAAA- 1191366 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || |||||| || ||||| || ||||| | || |||||||| | || ||||| Sbjct 1191367 TCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAATCCCGGCATT 1191426 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 | || ||||| |||| ||| || ||||| || || ||| |||||||||||||| || Sbjct 1191427 AACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAAGATCCCTTCA 1191486 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 || || ||||| || | ||| | ||| || ||| | ||| || | ||| ||| Sbjct 1191487 ACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGAC---CCGTCGATCCATTTC 1191543 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 ||||||||||| ||||| || ||| || || | ||||| ||| || ||| || | Sbjct 1191544 ATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGAAAAAGGTGG 1191603 Query 130262 T-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC--A 130318 | ||| | || | || || ||||| | || | ||| || | | || || | Sbjct 1191604 TCTCTCTCCT-TCGCGTCCTTTATGTAGGTGTCGAGGAG--GAGACTGTACATCTCCGAA 1191660 Query 130319 TGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACC 130378 |||| | || | | ||| | ||||||| | ||||| || | ||| || Sbjct 1191661 TGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACCTGAACA 1191720 Query 130379 TC--ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 130436 || | || || | | || ||||| || ||||| || ||||| | ||||| | Sbjct 1191721 TCGGACATG--AACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGCAAAGA 1191778 Query 130437 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTT---CCAGTCGT 130493 | || |||| || | ||||| | | |||| |||||||||||||| ||| || Sbjct 1191779 AAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCAATCTC 1191838 Query 130494 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTAT 130553 | ||||| ||| ||||| |||||||| || |||||| | ||||||||| | Sbjct 1191839 GGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTTCTTGT 1191898 Query 130554 AGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAACA 130589 | | ||||||| || ||| | | | ||||||| Sbjct 1191899 ACATCTCCCAGATCTGAGGAAATTGAATCGGGAACA 1191934 >seq6273 Length=1470056 Score = 122 bits (134), Expect = 1e-22 Identities = 205/291 (70%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 |||||||||||| |||| ||||| || || ||| |||||||| ||||||||||||||| Sbjct 522083 AATTACCGAGAAGCCTACGGTCTATTCGCCTGCAACGGTATTCTGTTCAACCACGAGTCA 522024 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAAA 12039 || ||||| ||| | | |||||||| ||| || || || ||| | | ||| Sbjct 522023 CCGCGTCGGGGCGAGAACTTCGTGACTCGGAAAATAACTCGGGCGGTGGGACGGATCAA- 521965 Query 12040 TCGTGGCGGGTG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 |||| | || || || || | ||| |||| |||||| | || |||||||||| Sbjct 521964 -GGTGG-GATTGCAGCGGAAGCT-ATT--CCTGGGAAACCTCCAGGCATCGAGGGACTGG 521910 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 ||| || |||||| || || || |||||||| | || || || || |||||||| Sbjct 521909 GGATTCGCGGGGGACTACGTGGAGGCAATGTGGCTGATGCTGCAGCAGGAGAAGGCGGAC 521850 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 || || || || ||||| | |||| | ||| | || ||| ||| | ||| Sbjct 521849 GATTACGTGGTGGCGACAGAGGAGTCGCACACAGTGGAGGAATTCCTGGAG 521799 >seq7521 Length=6323785 Score = 105 bits (116), Expect = 8e-18 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC- 14208 || || || |||||||| |||| ||| || || | ||| ||||| | ||| ||||| | Sbjct 1637381 TCGAAACCGTCCATCTCGGTCAGGAGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCT 1637440 Query 14209 --AGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | |||||| | || |||| ||||||| ||||| |||||||| | || ||| Sbjct 1637441 CCACCGATACCAGTTCCTCT---TTGCCTACCGACAGCGTCTATTTCATCCACAAAGACG 1637497 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 || ||||| |||||| ||| | |||| ||| || || ||| |||||| ||| Sbjct 1637498 ATGCATGGAGCATTTTCCTTGGCTTTCTTGAAGAGATCACGGACCCTCGAGGCACCAACA 1637557 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||||||||| | || | | | || | || || ||||| || ||| Sbjct 1637558 CCGACAAACATCTCCACAAACTCGGAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTC 1637616 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||| || || ||| || || || ||||| || || || || Sbjct 1637617 ACCGGCAATTGCTTTTGCCAGAAGCGTCTTTCCGGTACCAGG 1637658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618340509840440