Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 145 9e-30
seq6695 105 8e-18
seq1104 102 1e-16
seq555 82.4 9e-11
>seq7521
Length=6323785
Score = 145 bits (160), Expect = 9e-30
Identities = 299/441 (68%), Gaps = 8/441 (2%)
Strand=Plus/Plus
Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634
|| || || || || || | ||||| || | | || ||||| |||||||| ||||
Sbjct 1637345 TTTGTAGCTGCAATCACGATGATACCGGTATTACCCTCGAAACCGTCCATCTCGGTCAGG 1637404
Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGT 9691
|| ||||||| || ||||| | ||| ||||| || ||| ||||| | | |
Sbjct 1637405 AGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCTCC---ACCGATACCAGTTCCTCTT 1637461
Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751
||| | || || || || || ||||| | |||||||||||||| |||||| ||
Sbjct 1637462 TGCCTACCGACAGCGTCTATTTCATCCACAAAGACGATGCATGGAGCATTTTCCTTGGCT 1637521
Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811
| |||||||| || || | | ||| || ||||| ||||||||||||||||| |
Sbjct 1637522 TTCTTGAAGAGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCCACAAACTCG 1637581
Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870
| | | | || | || || |||||| || |||||| ||||| ||| || |||||
Sbjct 1637582 GAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTCACCGGCAATTGCTTTTGCCAGAAG 1637640
Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACT 9930
||||| || ||||| || ||| | ||||| ||||| |||||| |||||||
Sbjct 1637641 CGTCTTTCCGGTACCAGGAGGACCGACAAGGAGAACACCTTTAGGAATCCTGGCGCCGAC 1637700
Query 9931 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990
|| | |||||||||| | ||| ||||| || || | ||| || || | |||||
Sbjct 1637701 CGCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGACTACTTCCATGAAGTCTTGCTTGGC 1637760
Query 9991 GGCGTCAATCCCCTCAACATC 10011
| |||| || |||||||
Sbjct 1637761 TTCATCAACTCCGGCAACATC 1637781
>seq6695
Length=6602074
Score = 105 bits (116), Expect = 8e-18
Identities = 197/289 (68%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715
||||| |||||| |||| | || | || || ||||||| |||| | || ||
Sbjct 4468449 GGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGAGACCACCT 4468508
Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775
|||| |||||| | || || || || | ||||| ||| | ||||| ||||| ||
Sbjct 4468509 CTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATG 4468568
Query 94776 GTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 94835
| | || ||| | ||| || ||| ||||| |||| || || || || || ||
Sbjct 4468569 GATCGACGG---GTCTCAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGG 4468625
Query 94836 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895
||||||||||| || |||||||| |||| |||||| || ||||| || | |||||
Sbjct 4468626 GATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCC 4468685
Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| | ||||| ||||| | ||||| || ||||| || ||||||
Sbjct 4468686 GGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCAC 4468734
>seq1104
Length=4098138
Score = 102 bits (112), Expect = 1e-16
Identities = 376/582 (65%), Gaps = 14/582 (2%)
Strand=Plus/Minus
Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429
||||||| | ||||||| | | | ||| || ||||||| | || |||||||||
Sbjct 1191946 ACAGATTCTGTATGTTCCCGATTCAATTTCCTCAGATCTGGGAGATGTACAAGAAGGCTG 1191887
Query 94430 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG---A 94486
| |||||| || || ||||| ||||| || ||||| | |||||| |
Sbjct 1191886 AGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCGCAGGATGTCCGAGATTGGGAGA 1191827
Query 94487 AGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGAT 94546
|||| || || || ||| | | ||||| | | |||| || |||||||| | |
Sbjct 1191826 AGACCCTGAACGACGGCGAACGGCACTTCATCACCCATGTCCTCGCTTTCTTTGCCGCCT 1191767
Query 94547 CCGATGGAATTGTTTTTGAGAATATCAATAACAACTT--TG-CTGATGAGGTGCAATCCT 94603
|||| || ||||| || ||||| || | | || || | |||| | || |
Sbjct 1191766 CCGACGGTATTGTGTTGGAGAACCTCGCTTCCCGGTTCATGTCCGATG---TTCAGGTCG 1191710
Query 94604 CTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACA 94662
| || ||| | | ||||| | | ||| || || || | | ||| |||||
Sbjct 1191709 CGGAGGCGCGTGCATTCTACGGCTTCCAGA-TCGCGATCGAGAACATCCATTCGGAGATG 1191651
Query 94663 TACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA 94722
|||||| ||| | |||| || || ||||| | |||| | || || |||
Sbjct 1191650 TACAGTCTCCTCCTCGACACCTACATAAAGGACGCGAAGGAGAGAGACCACCTTTTTCGC 1191591
Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782
|||||| | || |||| || | ||||| || | ||||| ||||| ||| | ||
Sbjct 1191590 GCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGAC 1191531
Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842
||| | ||| || ||| ||||| |||| || || || ||||| || ||||||
Sbjct 1191530 GG---GTCTCAGAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTC 1191474
Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902
||||| || ||||||||| || | |||||| || ||||| || | ||||| || |
Sbjct 1191473 TTCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTA 1191414
Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||| |||||| | ||||| || ||||| || ||||||
Sbjct 1191413 ACTTTCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCAC 1191372
>seq555
Length=388411
Score = 82.4 bits (90), Expect = 9e-11
Identities = 143/201 (71%), Gaps = 14/201 (7%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| || |||||||| ||||| | || ||||| || || || | ||||||||| ||
Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897
Query 9674 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
|||| ||||| | | ||| | ||||| |||||||||||||||||||| || |||
Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
||||| ||||| || || ||||| | ||||| || || || | || || ||
Sbjct 76956 CATGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 77011
Query 9787 ACCAACAAACATCTCCACAAA 9807
||| || || | |||||||||
Sbjct 77012 ACCCACGAAAAGCTCCACAAA 77032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583171495480760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |