Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7521 145 9e-30 seq6695 105 8e-18 seq1104 102 1e-16 seq555 82.4 9e-11 >seq7521 Length=6323785 Score = 145 bits (160), Expect = 9e-30 Identities = 299/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || || || | ||||| || | | || ||||| |||||||| |||| Sbjct 1637345 TTTGTAGCTGCAATCACGATGATACCGGTATTACCCTCGAAACCGTCCATCTCGGTCAGG 1637404 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGT 9691 || ||||||| || ||||| | ||| ||||| || ||| ||||| | | | Sbjct 1637405 AGCTGGTTAAGGGTCTGTTCTCTTTCGTCATTACCTCC---ACCGATACCAGTTCCTCTT 1637461 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 ||| | || || || || || ||||| | |||||||||||||| |||||| || Sbjct 1637462 TGCCTACCGACAGCGTCTATTTCATCCACAAAGACGATGCATGGAGCATTTTCCTTGGCT 1637521 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 | |||||||| || || | | ||| || ||||| ||||||||||||||||| | Sbjct 1637522 TTCTTGAAGAGATCACGGACCCTCGAGGCACCAACACCGACAAACATCTCCACAAACTCG 1637581 Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | | | | || | || || |||||| || |||||| ||||| ||| || ||||| Sbjct 1637582 GAACCCG-AGATGGAGAAAAAAGGGACACCAGCTTCACCGGCAATTGCTTTTGCCAGAAG 1637640 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACT 9930 ||||| || ||||| || ||| | ||||| ||||| |||||| ||||||| Sbjct 1637641 CGTCTTTCCGGTACCAGGAGGACCGACAAGGAGAACACCTTTAGGAATCCTGGCGCCGAC 1637700 Query 9931 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 || | |||||||||| | ||| ||||| || || | ||| || || | ||||| Sbjct 1637701 CGCAGTGAATCTCTCAGGCTTCTTCAGAAACTCGACTACTTCCATGAAGTCTTGCTTGGC 1637760 Query 9991 GGCGTCAATCCCCTCAACATC 10011 | |||| || ||||||| Sbjct 1637761 TTCATCAACTCCGGCAACATC 1637781 >seq6695 Length=6602074 Score = 105 bits (116), Expect = 8e-18 Identities = 197/289 (68%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715 ||||| |||||| |||| | || | || || ||||||| |||| | || || Sbjct 4468449 GGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGAGACCACCT 4468508 Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775 |||| |||||| | || || || || | ||||| ||| | ||||| ||||| || Sbjct 4468509 CTTTCGTGCCATCGAGACCGTCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCAATGAAATG 4468568 Query 94776 GTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 94835 | | || ||| | ||| || ||| ||||| |||| || || || || || || Sbjct 4468569 GATCGACGG---GTCTCAAAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTCGAAGG 4468625 Query 94836 TATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCC 94895 ||||||||||| || |||||||| |||| |||||| || ||||| || | ||||| Sbjct 4468626 GATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGGGTTGATGCC 4468685 Query 94896 AGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || | ||||| ||||| | ||||| || ||||| || |||||| Sbjct 4468686 GGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCAC 4468734 >seq1104 Length=4098138 Score = 102 bits (112), Expect = 1e-16 Identities = 376/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429 ||||||| | ||||||| | | | ||| || ||||||| | || ||||||||| Sbjct 1191946 ACAGATTCTGTATGTTCCCGATTCAATTTCCTCAGATCTGGGAGATGTACAAGAAGGCTG 1191887 Query 94430 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG---A 94486 | |||||| || || ||||| ||||| || ||||| | |||||| | Sbjct 1191886 AGGCCTCGTTTTGGACCGCCGAGGAGGTCGATCTGTCGCAGGATGTCCGAGATTGGGAGA 1191827 Query 94487 AGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGAT 94546 |||| || || || ||| | | ||||| | | |||| || |||||||| | | Sbjct 1191826 AGACCCTGAACGACGGCGAACGGCACTTCATCACCCATGTCCTCGCTTTCTTTGCCGCCT 1191767 Query 94547 CCGATGGAATTGTTTTTGAGAATATCAATAACAACTT--TG-CTGATGAGGTGCAATCCT 94603 |||| || ||||| || ||||| || | | || || | |||| | || | Sbjct 1191766 CCGACGGTATTGTGTTGGAGAACCTCGCTTCCCGGTTCATGTCCGATG---TTCAGGTCG 1191710 Query 94604 CTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACA 94662 | || ||| | | ||||| | | ||| || || || | | ||| ||||| Sbjct 1191709 CGGAGGCGCGTGCATTCTACGGCTTCCAGA-TCGCGATCGAGAACATCCATTCGGAGATG 1191651 Query 94663 TACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA 94722 |||||| ||| | |||| || || ||||| | |||| | || || ||| Sbjct 1191650 TACAGTCTCCTCCTCGACACCTACATAAAGGACGCGAAGGAGAGAGACCACCTTTTTCGC 1191591 Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || |||| || | ||||| || | ||||| ||||| ||| | || Sbjct 1191590 GCCATCGAGACCATTCCTTGCGTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGAC 1191531 Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842 ||| | ||| || ||| ||||| |||| || || || ||||| || |||||| Sbjct 1191530 GG---GTCTCAGAGCTTCGCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTC 1191474 Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||| || ||||||||| || | |||||| || ||||| || | ||||| || | Sbjct 1191473 TTCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTA 1191414 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| |||||| | ||||| || ||||| || |||||| Sbjct 1191413 ACTTTCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCAC 1191372 >seq555 Length=388411 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/201 (71%), Gaps = 14/201 (7%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || || |||||||| ||||| | || ||||| || || || | ||||||||| || Sbjct 76839 AATCCGTCCATCTCCGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC- 76897 Query 9674 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 |||| ||||| | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 76898 --ACCAAGTCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATG 76955 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 ||||| ||||| || || ||||| | ||||| || || || | || || || Sbjct 76956 CATGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 77011 Query 9787 ACCAACAAACATCTCCACAAA 9807 ||| || || | ||||||||| Sbjct 77012 ACCCACGAAAAGCTCCACAAA 77032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583171495480760