Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6695 143 3e-29 seq1104 118 1e-21 >seq6695 Length=6602074 Score = 143 bits (158), Expect = 3e-29 Identities = 437/663 (66%), Gaps = 22/663 (3%) Strand=Plus/Plus Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 |||||||||| | | ||||| || | ||||||| | |||| ||| | |||| || Sbjct 4468383 GGATGTCCAGGTCTCGGAGGCGCGCGCCTTCTACGGCTTTCAGATCGCG-ATCGAGAATA 4468441 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| |||| || | |||||| | |||||||| || |||||| | Sbjct 4468442 TCCACTCGGAGATGTACAGTCTACTCCTCGATACCTACATCAAGGATGCGAAAGAGAGAG 4468501 Query 59887 CTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 || || |||||||| ||||| ||||| || || | || || | ||||| Sbjct 4468502 ACCACCTCTTTCGTGCCATCGAGACCGTCCCTTGC-GTCGCGAAGAAGGCGCAGTGGGCA 4468560 Query 59946 ATGCAGTGGAT----GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 ||| | ||||| | ||| ||| || || | | ||||| || || || || Sbjct 4468561 ATGAAATGGATCGACGGGTCTCAAAGCTTC----GCCGAGAGACTCATCGCCTTCGCCTG 4468616 Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| ||||||||||| ||| ||||| || ||||| ||||| |||||||| || Sbjct 4468617 CGTCGAAGGGATCTTCTTCTCCGGCAGTTTCTGCGCGATTTTTTGGCTAAAAAAGCGGGG 4468676 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCA 60121 | |||||||| | | |||||| ||||| |||| || || ||||| |||||||| Sbjct 4468677 GTTGATGCCGGGATTAACTTTCTCGAACGAATTGATCTCGCGAGACGAAGGCCTCCACTG 4468736 Query 60122 GGAGTTTGCAGTGACGCTCTATTCA--CACCTATTGGAAAAATGCCCTTCCAAGGATATT 60179 || || || ||| | | |||| || | ||| ||| || | || |||| Sbjct 4468737 CGATTTCGC-GTGTCTC-CTATACAGTCTCCT-CAGGACCAA--GCTGACCGAGGAGCGC 4468791 Query 60180 CACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTT 60236 |||| || || | || || | ||||| |||||| | || || || Sbjct 4468792 GTCAAGTCAATCGTCCGCGACGCCGTCGACATCGAGAGAGAGTTCGTATGCGACGCTCTG 4468851 Query 60237 CCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCG 60296 |||||| | | || ||| || || |||| || ||||| ||||||| ||| Sbjct 4468852 CCATGCGCGTTGGTGGGGATGAACCGTGACTTGATGAGCCAATACATCGAGTTTGTGGCG 4468911 Query 60297 GACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGAC 60356 || || || ||| | |||| | || | ||||| ||| || || || || Sbjct 4468912 GATCGGCTGCTGGGTGCGCTTGGGTACGGTAAGGTGTACGGTGTGCCAAATCCATTTGAT 4468971 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 ||||||||| || ||| | | ||||||||||||||||| |||||||||||||| || Sbjct 4468972 TGGATGGAGCTGATATCGCTACAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGCGAG 4469031 Query 60417 TAT 60419 ||| Sbjct 4469032 TAT 4469034 >seq1104 Length=4098138 Score = 118 bits (130), Expect = 1e-21 Identities = 344/520 (66%), Gaps = 25/520 (5%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAG- 59669 || || ||| ||| ||||||| | || || ||| ||| | || |||||||| ||| Sbjct 1191881 TCGTTTTGGACCGCCGAGGAGGTCGATCTGTCGCAGGATGTCCGA--GATTGGGAGAAGA 1191824 Query 59670 --CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTG 59727 || || ||| ||| | ||| ||||||| ||||| || ||||| || || | Sbjct 1191823 CCCTGAACGACGGCGAACGGCACTTCATCACCCATGTCCTCGCTTTCTTTGCCGCCTCCG 1191764 Query 59728 ATGGAATTGTGATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCG 59784 | || |||||| |||| || | | | | | | ||| ||||| ||| | || | Sbjct 1191763 ACGGTATTGTGTTGGAGAACCTCGCTTCCCGGTTCATGTCC---GATGTTCAGGTCGCGG 1191707 Query 59785 AGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTAC 59843 |||| || | ||||||| | ||| ||| | |||| ||||| || |||| |||| Sbjct 1191706 AGGCGCGTGCATTCTACGGCTTCCAGATCGCG-ATCGAGAACATCCATTCGGAGATGTAC 1191648 Query 59844 TCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCC 59903 ||| | |||| | | | ||||| || | |||| | || || || ||| Sbjct 1191647 AGTCTCCTCCTCGACACCTACATAAAGGACGCGAAGGAGAGAGACCACCTTTTTCGCGCC 1191588 Query 59904 ATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GA 59958 || ||||| | || || || | || ||| | ||||| ||| | ||||| | Sbjct 1191587 ATCGAGACCATTCCTTGC-GTCGCCAAGAAGGCACAGTGGGCGATGAAATGGATCGACGG 1191529 Query 59959 GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCT 60018 ||| |||| || || | | ||||| || || || ||||| ||||| ||||||| Sbjct 1191528 GTCTCAGAGCTTC----GCCGAGAGACTCATCGCCTTCGCCTGCGTTGAAGGGATCTTCT 1191473 Query 60019 TCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGA 60078 |||| ||| ||||| || || || ||||| |||||||| || | |||||||| | | Sbjct 1191472 TCTCCGGCAGCTTCTGCGCGATATTTTGGCTGAAAAAGCGCGGGTTAATGCCGGGATTAA 1191413 Query 60079 GTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| |||||| |||| || || ||||| |||||||| Sbjct 1191412 CTTTCTCGAACGAGTTGATCTCGCGAGACGAAGGCCTCCA 1191373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548440813996560