Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5186 95.1 1e-14 seq7859 89.7 6e-13 seq5355 89.7 6e-13 seq1 89.7 6e-13 seq11816 84.2 2e-11 seq6431 82.4 8e-11 >seq5186 Length=9353477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 7800518 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7800577 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 7800578 TGAGCTACGAAAGC 7800591 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6547300 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6547359 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6547360 TGAGCTACGAAAGC 6547373 >seq7859 Length=784361 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 555875 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 555816 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 555815 TGAGCTACGAAAGC 555802 >seq5355 Length=2579661 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1416367 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1416426 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1416427 TGAGCTACGAAAGC 1416440 >seq1 Length=11827220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4907465 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4907524 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 4907525 TGAGCTACGAAAGC 4907538 >seq11816 Length=440166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 47334 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 47275 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 47274 ACTGAGCTACGAGAGC 47259 >seq6431 Length=1380396 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 677776 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 677717 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 677716 TGAGCTACGAGAGCTAA 677700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547132214390200