Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3309 96.9 3e-15 >seq3309 Length=3363706 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || ||||| ||||| |||||||| ||||| || || | ||||| || || | |||||| Sbjct 757489 CAGTTCTATGTCGCAAATGGGGAACTGTCATGTCAAATGTATCAGCGTTCAGCTGACATG 757548 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || || || |||||||||||| ||| |||| || |||| ||| ||||||||| Sbjct 757549 GGCCTCGGTGTACCATTCAACATTGCTTCATACTCTCTCCTTACGTGCATTATCGCTCAT 757608 Query 34727 GTCGTGGGGT 34736 | |||| ||| Sbjct 757609 G-CGTGTGGT 757617 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 6609 ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 ||| |||| |||||||||| ||| |||| || |||| ||| |||||||||||| || | Sbjct 757617 ACCACACG-CATGAGCGATAATGCACGTAAGGAGAGAGTATGAAGCAATGTTGAATGGTA 757559 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGA 6728 | || | |||||||| | || || ||||| | || || ||||| |||||||| |||| Sbjct 757558 CACCGAGGCCCATGTCAGCTGAACGCTGATACATTTGACATGACAGTTCCCCATTTGCGA 757499 Query 6729 CGTAGAATTG 6738 | ||||| || Sbjct 757498 CATAGAACTG 757489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448193765423280