Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7521 105 5e-18 seq6695 91.5 1e-13 seq5186 89.7 4e-13 seq10304 84.2 2e-11 seq6636 84.2 2e-11 >seq7521 Length=6323785 Score = 105 bits (116), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || || |||| ||||| ||| | Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || |||||| ||||| ||||| |||| ||| | Sbjct 4431102 GACACCATTGACAAT--GTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCGGACC 4431045 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||||||||| | || || | |||| |||| |||| |||| Sbjct 4431044 AGCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACA 4430985 Query 27968 ACATCCAAAAAGAG 27981 |||||||||| ||| Sbjct 4430984 ACATCCAAAAGGAG 4430971 >seq6695 Length=6602074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || || | || || || || | Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||| || ||||| ||||| |||| ||| | Sbjct 809833 GACACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACC 809890 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| ||||| | || || | |||| |||| |||| |||| Sbjct 809891 AGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACA 809950 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 809951 ACATCCAAAAGGA 809963 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || || | || || || || | Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||| || ||||| ||||| | || ||| | Sbjct 804701 GACACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACC 804758 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| ||||| | || || | |||| |||| |||| |||| Sbjct 804759 AGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACA 804818 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 804819 ACATCCAAAAGGA 804831 >seq5186 Length=9353477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| ||| |||||| || | ||||| ||||| || || |||| Sbjct 7866161 GACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTGATTTTCGCCGGGAAGCAGCTGGAG 7866102 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || |||| ||||||||||| |||||| || | || |||||| | Sbjct 7866101 GATGGACGCACCCTGGCCGACTACAACATCCAGAAAGAGTCTACCCTCCACTTGGTTCTC 7866042 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 7866041 CGTCTGCGTGGTGG 7866028 >seq10304 Length=4769457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || ||||| || || |||| ||||| | Sbjct 685390 AAGATGCAGATCTTCGTGAAAACACTAACGGGGAAGACCATAACCCTTGAAGTCGAGTCC 685449 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| ||||| || || ||||| ||||| | ||| || Sbjct 685450 TCCGACACCATCGACAAT--GTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCGCCGG 685507 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| ||| | ||||| ||||| ||||| ||||| |||| |||| | | | || | Sbjct 685508 ACCAGCAGCGGCTGATTTTCGCCGGGAAACAGTTGGAGGACGGCCGCACCCTCGCAGACT 685567 Query 27965 ACAACATCCAAAAAGAG 27981 |||||||||| || ||| Sbjct 685568 ACAACATCCAGAAGGAG 685584 >seq6636 Length=1297912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||||||||| ||||| ||||| ||| || | || ||||| | Sbjct 788046 AAGATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATAACCCTAGAGGTCGAGTCC 787987 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| ||| ||||| || || || || ||||| ||||| | ||| || Sbjct 787986 TCCGACACGATCGACAAT--GTGAAGGCCAAGATTCAGGACAAGGAAGGAATCCCGCCGG 787929 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || || ||||| || ||| |||| |||| || | | |||| | Sbjct 787928 ACCAGCAGCGATTGATCTTCGCCGGGAAGCAACTGGAGGACGGTCGGACACTCGCCGACT 787869 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||| || || || | || |||||| | ||| | | || |||| Sbjct 787868 ACAACATCCAGAAGGAATCGACGCTCCACTTGGTTCTCCGTCTCAGAGGAGGCG 787815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355809275192823