Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 105 5e-18
seq6695 91.5 1e-13
seq5186 89.7 4e-13
seq10304 84.2 2e-11
seq6636 84.2 2e-11
>seq7521
Length=6323785
Score = 105 bits (116), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || || || || || || |||| ||||| ||| |
Sbjct 4431162 ATGCAAATCTTTGTGAAAACACTCACCGGAAAGACCATCACCCTTGAAGTCGAGAGCTCG 4431103
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| || || |||||| ||||| ||||| |||| ||| |
Sbjct 4431102 GACACCATTGACAAT--GTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCGGACC 4431045
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || |||||||||||||| | || || | |||| |||| |||| ||||
Sbjct 4431044 AGCAAAGGCTTATCTTTGCCGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGACTACA 4430985
Query 27968 ACATCCAAAAAGAG 27981
|||||||||| |||
Sbjct 4430984 ACATCCAAAAGGAG 4430971
>seq6695
Length=6602074
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || || || || || || | || || || || |
Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| |||||| ||| || ||||| ||||| |||| ||| |
Sbjct 809833 GACACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACC 809890
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || |||||||| ||||| | || || | |||| |||| |||| ||||
Sbjct 809891 AGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACA 809950
Query 27968 ACATCCAAAAAGA 27980
|||||||||| ||
Sbjct 809951 ACATCCAAAAGGA 809963
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || || || || || || | || || || || |
Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| |||||| ||| || ||||| ||||| | || ||| |
Sbjct 804701 GACACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACC 804758
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| || | || |||||||| ||||| | || || | |||| |||| |||| ||||
Sbjct 804759 AGCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACA 804818
Query 27968 ACATCCAAAAAGA 27980
|||||||||| ||
Sbjct 804819 ACATCCAAAAGGA 804831
>seq5186
Length=9353477
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || ||| |||| ||| |||||| || | ||||| ||||| || || ||||
Sbjct 7866161 GACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTGATTTTCGCCGGGAAGCAGCTGGAG 7866102
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||||| | || |||| ||||||||||| |||||| || | || |||||| |
Sbjct 7866101 GATGGACGCACCCTGGCCGACTACAACATCCAGAAAGAGTCTACCCTCCACTTGGTTCTC 7866042
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||| ||
Sbjct 7866041 CGTCTGCGTGGTGG 7866028
>seq10304
Length=4769457
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/197 (70%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || |||||||| || || ||||| || || |||| ||||| |
Sbjct 685390 AAGATGCAGATCTTCGTGAAAACACTAACGGGGAAGACCATAACCCTTGAAGTCGAGTCC 685449
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||||| || ||||| ||||| || || ||||| ||||| | ||| ||
Sbjct 685450 TCCGACACCATCGACAAT--GTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCGCCGG 685507
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| ||| | ||||| ||||| ||||| ||||| |||| |||| | | | || |
Sbjct 685508 ACCAGCAGCGGCTGATTTTCGCCGGGAAACAGTTGGAGGACGGCCGCACCCTCGCAGACT 685567
Query 27965 ACAACATCCAAAAAGAG 27981
|||||||||| || |||
Sbjct 685568 ACAACATCCAGAAGGAG 685584
>seq6636
Length=1297912
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/234 (68%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| |||||||||||||| ||||| ||||| ||| || | || ||||| |
Sbjct 788046 AAGATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATAACCCTAGAGGTCGAGTCC 787987
Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||||| ||| ||||| || || || || ||||| ||||| | ||| ||
Sbjct 787986 TCCGACACGATCGACAAT--GTGAAGGCCAAGATTCAGGACAAGGAAGGAATCCCGCCGG 787929
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || || || || ||||| || ||| |||| |||| || | | |||| |
Sbjct 787928 ACCAGCAGCGATTGATCTTCGCCGGGAAGCAACTGGAGGACGGTCGGACACTCGCCGACT 787869
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018
|||||||||| || || || | || |||||| | ||| | | || ||||
Sbjct 787868 ACAACATCCAGAAGGAATCGACGCTCCACTTGGTTCTCCGTCTCAGAGGAGGCG 787815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355809275192823
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |