Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5186 93.3 4e-14 seq6695 86.0 5e-12 >seq5186 Length=9353477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||| || || ||||| ||||| || ||||| | | || || Sbjct 4547118 CACCAGATGCAGCGTCGACTCCTTCTGGATATTGTAATCAGCCAGTGTCCTCCCATCTTC 4547059 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || | |||||| || | ||| | | || |||||| Sbjct 4547058 CAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTG 4546999 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | ||| ||| |||||| |||| ||||| | || Sbjct 4546998 GATCTTGGTTTTGACATTCTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTT 4546939 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || || ||||| || |||||||||||| Sbjct 4546938 GCCGGTGAGGGTTTTCACGAAGATTTGCATC 4546908 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || |||||||| || |||| || ||||| || || || || Sbjct 7865607 CTCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTCCTCCAGCTGCTTTCCAGCGAA 7865666 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||| |||||||||||||| | ||| | | ||| |||||| || ||| || | ||| Sbjct 7865667 TATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGTATCTTCGCCTTCA-CGT 7865725 Query 39213 CG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 | | | ||| || ||| |||||| |||| |||||| | || || ||||| || | Sbjct 7865726 TGTCGATCGTGTCCGAGCT---CTCCACTTCCAGTGTGATAGTCTTACCGGTCAGGGTCT 7865782 Query 39269 TAACAAAGATTTGCATC 39285 | || ||||| |||||| Sbjct 7865783 TCACGAAGATCTGCATC 7865799 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || || || || || ||||| || || | || ||| Sbjct 7866502 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCGACCATCCTCA 7866561 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || | ||||||||| | || | | |||||||||| | Sbjct 7866562 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGG 7866621 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || || | ||| | || | | ||| ||| || |||| |||||| | || Sbjct 7866622 ATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAACGTGATCGTCTT 7866680 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || ||||||||||| Sbjct 7866681 ACCCGTGAGGGTCTTGACGAAGATTTGCAT 7866710 >seq6695 Length=6602074 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||||| || ||||| ||||| ||||| || | | |||| || Sbjct 810437 ACCAAATGGAGAGTGGATTCTTTCTGGATATTGTAATCAGCAAGGGTCCTTCCGTCCTCG 810378 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| ||||| | |||||||| | || | | || |||||| | Sbjct 810377 AGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 810318 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || || | ||| | | | ||||| ||| ||| || || | ||||| | Sbjct 810317 ATCTT-TGCCTTCACGTTGTCAATGGTATCAGAGCT---CTCAACCTCGAGGGTGATCGT 810262 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || || || || ||||| ||||| Sbjct 810261 TTTGCCGGTAAGAGTCTTCACGAAGATCTGCAT 810229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429481475419337