Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6695 111 1e-19 seq5186 109 4e-19 seq6636 104 2e-17 seq1 100 2e-16 seq7521 93.3 3e-14 >seq6695 Length=6602074 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || ||||||||||||||||| || Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||| || ||||| ||||| | || || || || Sbjct 804701 GACACCATTGACAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 804759 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||||||||| || || || | ||||| || | ||| ||||| Sbjct 804760 GCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAA 804819 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 804820 CATCCAAAAGGAATCGAC 804837 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || ||||||||||||||||| || Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||| || ||||| ||||| | || || || || Sbjct 809833 GACACCATTGACAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 809891 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||||||||| || || || | ||||| || | ||| ||||| Sbjct 809892 GCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAA 809951 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 809952 CATCCAAAAGGAATCGAC 809969 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| | | Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 804929 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 804988 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||| | | | || | | || |||||| Sbjct 804989 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 805048 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || | ||| | ||||| |||| || Sbjct 805049 ATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 805095 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| | | Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 810061 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 810120 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||| | | | || | | || |||||| Sbjct 810121 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 810180 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || | ||| | ||||| |||| || Sbjct 810181 ATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 810227 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| ||||| || ||||| |||||||| | | Sbjct 810685 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAAACCATAACTCTTGAAGTTGAGAGCTCA 810744 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || | || || || ||||| | || || || || Sbjct 810745 GATACCATTGACAATGTTAAGGCGAAGA-TTCAGGATAAGGAAGGGATCCCTCCGGACCA 810803 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| ||||| || | ||| || | | || ||||| Sbjct 810804 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCAGACTACAA 810863 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 810864 CATCCAGAAAGAGTCCAC 810881 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||||||||| ||||| || |||||||| || || | | Sbjct 811140 AATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATAACTCTCGAGGTGGAGAGCTC 811199 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| || || ||||| ||||| | || || || || Sbjct 811200 GGATACCATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAAGGGATCCCACCCGACCA 811259 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || ||||| || | |||||| ||| |||||||| Sbjct 811260 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGACGCACCCTAGCTGATTACAA 811319 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 811320 TATCCAGAAGGAATCGAC 811337 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||||||||| ||||| ||||| | | Sbjct 810229 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAAACGATCACCCTCGAGGTTGAGAGCTCT 810288 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| || ||||| ||||| | || || || || Sbjct 810289 GATACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 810348 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| |||||||| || || |||| | | || | | |||||||| Sbjct 810349 CAAAGGCTTATCTTTGCTGGCAAACAGCTCGAGGACGGAAGGACCCTTGCTGATTACAAT 810408 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| ||||| | ||||| || Sbjct 810409 ATCCAGAAAGAATCCACTCTCCATTTGGT 810437 >seq5186 Length=9353477 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| |||||||| || || || || ||||| | | Sbjct 4547136 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATAACACTGGAGGTTGAAAGCTC 4547195 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || ||| ||||| || || | |||| || || Sbjct 4547196 GGACACGATCGAGAACGTGAAGTCGAAGATTCAGGACAAGGAGGGAATCTCGCCCGACCA 4547255 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | ||||| ||||| || || || ||||| | ||| ||| | ||||||||| Sbjct 4547256 ACAGAGGCTGATATTCGCCGGAAAGCAGCTCGAAGATGGACGAACTCTGTCCGATTACAA 4547315 Query 23790 CATACAAAAAGAGTCCAC 23807 ||||| |||||||| || Sbjct 4547316 TATACAGAAAGAGTCGAC 4547333 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || ||||||||||| || || || | | Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTCC 4546968 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||||| || || ||||| ||||| | || || ||||| Sbjct 4546969 GACACGATCGAGAATGTCAAAAC-CAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 4547027 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| ||||| |||||||| | | || | | |||||||| Sbjct 4547028 GCAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAA 4547087 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 4547088 TATCCAGAAGGAGTCGAC 4547105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || |||||||| | || ||||| | | Sbjct 7866710 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACGTTGGAGGTTGAGAGCTCC 7866651 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || || |||||||| ||| | || || || || Sbjct 7866650 GACACCATTGACAACGTAAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 7866591 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || || || || | || || | | || |||||| Sbjct 7866590 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGGACCCTTGCTGACTACAAC 7866531 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||||| ||| Sbjct 7866530 ATCCAGAAGGAGTCCACTCTCCATTTGGTT 7866501 >seq6636 Length=1297912 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || || || || || || || ||| Sbjct 788046 AAGATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATAACCCTAGAGGTCGAGTCC 787987 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || ||| ||||| ||||| | ||||| || Sbjct 787986 TCCGACACGATCGACAATGTGAAGGC-CAAGATTCAGGACAAGGAAGGAATCCCGCCGGA 787928 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || |||||||| |||| || || | | ||| || Sbjct 787927 CCAGCAGCGATTGATCTTCGCCGGGAAGCAACTGGAGGACGGTCGGACACTCGCCGACTA 787868 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || || || || | || || ||| Sbjct 787867 CAACATCCAGAAGGAATCGACGCTCCACTTGGTT 787834 >seq1 Length=11827220 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| ||||| || || ||||| || || || || | | Sbjct 5218647 AATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAAAGCTC 5218588 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 5218587 GGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 5218528 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || ||||| |||| ||||| | | || ||||| Sbjct 5218527 GCAGCGTCTGATCTTTGCCGGGAAGCAGCTGGAGGACGGTCGCACCCTGGCGGACTACAA 5218468 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 5218467 CATCCAGAAGGAGTCGAC 5218450 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||||||||| || || | | Sbjct 5219558 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACAATCACTCTCGAGGTCGAGAGCTCC 5219499 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| | ||||| || || | || || || || Sbjct 5219498 GACACAATTGACAATGTTAAGGCGAAAA-TCCAGGACAAGGAGGGGATCCCCCCGGACCA 5219440 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || |||| || | || || | | ||| ||||| Sbjct 5219439 GCAGAGGCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGAACGCTCGCCGACTACAA 5219380 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 5219379 CATCCAGAAAGAGTCCAC 5219362 >seq7521 Length=6323785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| ||||| || || | || Sbjct 4430706 ATGCAGATTTTCGTGAAGACCCTTACTGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 4430647 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || || ||||||||||| | || || || || Sbjct 4430646 GACACTATTGACAATGTCAAGGC-TAAGATCCAGGACAAAGAAGGGATCCCACCTGACCA 4430588 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||| || || || || |||| | | || | | |||||||| Sbjct 4430587 GCAAAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGAAGAACCCTTGCGGATTACAA 4430528 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 4430527 TATCCAGAAGGAGTCCAC 4430510 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || |||||||| ||||| || || | | Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||||||||| | || || || || Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGA-TTCAGGACAAAGAAGGAATCCCACCCGACCA 4430816 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||||||| | | || | | |||||||| Sbjct 4430815 ACAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAA 4430756 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 4430755 CATCCAGAAGGAATCCAC 4430738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337959140342492