Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05]
12,249 sequences; 249,929,577 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6695 111 1e-19
seq5186 109 4e-19
seq6636 104 2e-17
seq1 100 2e-16
seq7521 93.3 3e-14
>seq6695
Length=6602074
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||||||||| || || || ||||||||||||||||| ||
Sbjct 804641 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 804700
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | ||| || ||||| ||||| | || || || ||
Sbjct 804701 GACACCATTGACAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 804759
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || |||||||||||||| || || || | ||||| || | ||| |||||
Sbjct 804760 GCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAA 804819
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || || ||
Sbjct 804820 CATCCAAAAGGAATCGAC 804837
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||||||||| || || || ||||||||||||||||| ||
Sbjct 809773 ATGCAAATATTTGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCG 809832
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | ||| || ||||| ||||| | || || || ||
Sbjct 809833 GACACCATTGACAATGTCAAAGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 809891
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || |||||||||||||| || || || | ||||| || | ||| |||||
Sbjct 809892 GCAAAGGCTTATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCTTGGCCGACTACAA 809951
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || || ||
Sbjct 809952 CATCCAAAAGGAATCGAC 809969
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || ||||||||||| ||||| ||||| | |
Sbjct 804869 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 804928
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 804929 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 804988
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || || || || ||||| | | | || | | || ||||||
Sbjct 804989 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 805048
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || || || | || | ||| | ||||| |||| ||
Sbjct 805049 ATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 805095
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || ||||||||||| ||||| ||||| | |
Sbjct 810001 ATGCAGATCTTCGTAAAGACTCTTACCGGTAAAACGATCACCCTCGAGGTTGAAAGCTCC 810060
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 810061 GACACCATTGACAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTCCAGACCAA 810120
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || || || || ||||| | | | || | | || ||||||
Sbjct 810121 CAGAGACTCATCTTTGCTGGTAAGCAGCTCGAAGATGGAAGGACCCTTGCTGACTACAAC 810180
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || || || | || | ||| | ||||| |||| ||
Sbjct 810181 ATCCAAAAGGAATCAACTCTCCACCTGGTTCTCCGGTTGAGAGGTGG 810227
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||||||||| ||||| || ||||| |||||||| | |
Sbjct 810685 ATGCAGATCTTTGTCAAGACCCTCACGGGGAAAACCATAACTCTTGAAGTTGAGAGCTCA 810744
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| |||| | || | || || || ||||| | || || || ||
Sbjct 810745 GATACCATTGACAATGTTAAGGCGAAGA-TTCAGGATAAGGAAGGGATCCCTCCGGACCA 810803
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| |||||||| ||||| || | ||| || | | || |||||
Sbjct 810804 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGACGAACCCTTGCAGACTACAA 810863
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 810864 CATCCAGAAAGAGTCCAC 810881
Score = 105 bits (116), Expect = 5e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||||||||| ||||| || |||||||| || || | |
Sbjct 811140 AATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATAACTCTCGAGGTGGAGAGCTC 811199
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || |||| | |||| || || ||||| ||||| | || || || ||
Sbjct 811200 GGATACCATTGACAACGTAAAGGCGAAGATCCAGGACAAGGAAGGGATCCCACCCGACCA 811259
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| || || ||||| || | |||||| ||| ||||||||
Sbjct 811260 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGACGCACCCTAGCTGATTACAA 811319
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || || || ||
Sbjct 811320 TATCCAGAAGGAATCGAC 811337
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || ||||||||||| ||||| ||||| | |
Sbjct 810229 ATGCAGATCTTCGTGAAGACTCTTACCGGCAAAACGATCACCCTCGAGGTTGAGAGCTCT 810288
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || ||| || ||||| ||||| | || || || ||
Sbjct 810289 GATACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 810348
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || ||||| |||||||| || || |||| | | || | | ||||||||
Sbjct 810349 CAAAGGCTTATCTTTGCTGGCAAACAGCTCGAGGACGGAAGGACCCTTGCTGATTACAAT 810408
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || ||||| ||||| | ||||| ||
Sbjct 810409 ATCCAGAAAGAATCCACTCTCCATTTGGT 810437
>seq5186
Length=9353477
Score = 109 bits (120), Expect = 4e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || |||||||| |||||||| || || || || ||||| | |
Sbjct 4547136 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATAACACTGGAGGTTGAAAGCTC 4547195
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || | | || || ||| ||||| || || | |||| || ||
Sbjct 4547196 GGACACGATCGAGAACGTGAAGTCGAAGATTCAGGACAAGGAGGGAATCTCGCCCGACCA 4547255
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | | ||||| ||||| || || || ||||| | ||| ||| | |||||||||
Sbjct 4547256 ACAGAGGCTGATATTCGCCGGAAAGCAGCTCGAAGATGGACGAACTCTGTCCGATTACAA 4547315
Query 23790 CATACAAAAAGAGTCCAC 23807
||||| |||||||| ||
Sbjct 4547316 TATACAGAAAGAGTCGAC 4547333
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||||||||| || || ||||||||||| || || || | |
Sbjct 4546909 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACGATCACTCTGGAGGTGGAGAGCTCC 4546968
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||||| || || ||||| ||||| | || || |||||
Sbjct 4546969 GACACGATCGAGAATGTCAAAAC-CAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCA 4547027
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || ||||| ||||| |||||||| | | || | | ||||||||
Sbjct 4547028 GCAGAGGCTGATCTTCGCCGGAAAACAGCTGGAAGATGGGAGGACACTGGCTGATTACAA 4547087
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 4547088 TATCCAGAAGGAGTCGAC 4547105
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||||||||| || |||||||| | || ||||| | |
Sbjct 7866710 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATCACGTTGGAGGTTGAGAGCTCC 7866651
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| || || |||||||| ||| | || || || ||
Sbjct 7866650 GACACCATTGACAACGTAAAGGCCAAGATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 7866591
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || |||||||| || || || || | || || | | || ||||||
Sbjct 7866590 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGGACCCTTGCTGACTACAAC 7866531
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || |||||||| | ||||| |||
Sbjct 7866530 ATCCAGAAGGAGTCCACTCTCCATTTGGTT 7866501
>seq6636
Length=1297912
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || |||||||| ||||| || || || || || || || || |||
Sbjct 788046 AAGATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACTATAACCCTAGAGGTCGAGTCC 787987
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || ||| ||||| ||||| | ||||| ||
Sbjct 787986 TCCGACACGATCGACAATGTGAAGGC-CAAGATTCAGGACAAGGAAGGAATCCCGCCGGA 787928
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| || || || ||||| || |||||||| |||| || || | | ||| ||
Sbjct 787927 CCAGCAGCGATTGATCTTCGCCGGGAAGCAACTGGAGGACGGTCGGACACTCGCCGACTA 787868
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||||| || || || || || | || || |||
Sbjct 787867 CAACATCCAGAAGGAATCGACGCTCCACTTGGTT 787834
>seq1
Length=11827220
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| ||||| || || ||||| || || || || | |
Sbjct 5218647 AATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAAAGCTC 5218588
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| | | || || || ||||| ||||| | || || || ||
Sbjct 5218587 GGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 5218528
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || |||||||| || || ||||| |||| ||||| | | || |||||
Sbjct 5218527 GCAGCGTCTGATCTTTGCCGGGAAGCAGCTGGAGGACGGTCGCACCCTGGCGGACTACAA 5218468
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 5218467 CATCCAGAAGGAGTCGAC 5218450
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || |||||||| || || || ||||||||||| || || | |
Sbjct 5219558 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACAATCACTCTCGAGGTCGAGAGCTCC 5219499
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| |||| | |||| | ||||| || || | || || || ||
Sbjct 5219498 GACACAATTGACAATGTTAAGGCGAAAA-TCCAGGACAAGGAGGGGATCCCCCCGGACCA 5219440
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || || || || || |||| || | || || | | ||| |||||
Sbjct 5219439 GCAGAGGCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGAACGCTCGCCGACTACAA 5219380
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 5219379 CATCCAGAAAGAGTCCAC 5219362
>seq7521
Length=6323785
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || || || || ||||| ||||| || || | ||
Sbjct 4430706 ATGCAGATTTTCGTGAAGACCCTTACTGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 4430647
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| ||| | || | || || ||||||||||| | || || || ||
Sbjct 4430646 GACACTATTGACAATGTCAAGGC-TAAGATCCAGGACAAAGAAGGGATCCCACCTGACCA 4430588
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || |||||||| || || || || |||| | | || | | ||||||||
Sbjct 4430587 GCAAAGGCTCATCTTTGCCGGGAAGCAGCTCGAGGACGGAAGAACCCTTGCGGATTACAA 4430528
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 4430527 TATCCAGAAGGAGTCCAC 4430510
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || |||||||| ||||| || || | |
Sbjct 4430934 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGCTCC 4430875
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | || ||||||||||| | || || || ||
Sbjct 4430874 GACACCATTGACAATGTGAAGGCCAAGA-TTCAGGACAAAGAAGGAATCCCACCCGACCA 4430816
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || |||||||| || || |||||||| | | || | | ||||||||
Sbjct 4430815 ACAAAGACTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCAGGACCCTTGCTGATTACAA 4430756
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || |||||
Sbjct 4430755 CATCCAGAAGGAATCCAC 4430738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337959140342492
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