Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1104 109 5e-19 >seq1104 Length=4098138 Score = 109 bits (120), Expect = 5e-19 Identities = 391/597 (65%), Gaps = 16/597 (3%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| ||||| || || | |||||||||| || | |||| ||||| || || ||||| Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTC-GCGAGATCAACTCGTTCGAGAAAGTTAA 1191416 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| |||||||| || | |||||| ||||||||||| ||| || || || ||||| Sbjct 1191417 TCCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGCGCAGAAGCTGCCGGAGAAGAA 1191476 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTG-GCTTTGTCTT 4725 || ||||| ||| ||| || || | | || |||| | ||| | ||| Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAA-GCTCTGAGACCCGTC-- 1191533 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||||| | ||||| | || || || ||||| ||||| || | || ||| Sbjct 1191534 -GATCCATTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGC 1191592 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 ||| | | | | || | ||| | || || ||||| | || || || |||| Sbjct 1191593 GAAAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACA 1191652 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTT 4904 | || ||||| || || || || || ||||| || ||||| || ||| | || || | Sbjct 1191653 TCTCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCA-CGCGCCTCCGCG 1191711 Query 4905 ACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || ||||| ||| ||| || | | | ||| || || |||||||| ||| Sbjct 1191712 ACCTGAACATCG-GACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGC 1191770 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG---TTTTTT 5020 ||||| || || | ||||| | || |||| | ||||| | || || || | Sbjct 1191771 GGCAAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTC 1191830 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | | | ||| | | | ||| || || || | ||||||||||| || || || Sbjct 1191831 CCAATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGC 1191890 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGT 5136 || |||||||| ||| || | |||| | |||||||| | || ||| ||||||| Sbjct 1191891 CTTCTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACAT-ACAGAATCTGT 1191946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426985848033917