Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3309 105 9e-18 seq6747 93.3 6e-14 >seq3309 Length=3363706 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||| ||||| || || || |||| |||||||| || ||||| ||| ||| || Sbjct 2883346 CTCTCTCTCATAATGGGTGTAGAGCCTCTCAAATTCCTCACCCCAGCAATCTGCCAGACC 2883405 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||| |||||| ||||| | ||||||||| | ||||| || || | | ||| || Sbjct 2883406 AGGAGCTTCATTAGGGCAAAACAATGACCACTGCCCATCACTCTGGACCCTCTCCATGAA 2883465 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| || |||| || |||||||||||| Sbjct 2883466 AAGATCAGGAACCCAAAGAGCATAAAACAGGTCTCTGGCTCTATGTTCTTC 2883516 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || ||||| ||||| || |||||| | ||| | | || | Sbjct 2884124 GTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 2884183 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| || || || || ||||| | ||| || || || || || || | |||||| Sbjct 2884184 TAGGTTTTGATTGCAGAATCAATGTCATCCTTG-TGGATGCCAACAGCAACCCTCATCAA 2884242 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| |||||||| ||| | | ||||| | ||| ||| | || | Sbjct 2884243 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGGACTTTCAGGAGGTAGGATCTCTCAAG 2884302 Query 78578 AGTTTTAAAACCAAAATA 78595 |||||||| ||||| || Sbjct 2884303 TGTTTTAAATCCAAAGTA 2884320 >seq6747 Length=1176643 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 ||||| |||||||| ||||| ||||| || || ||| | | | || | || ||| Sbjct 666294 AAAGCAATAGATGCAAGATTGCAAACAGCAGTTTCCGTAGGGCTAGTGTACTCAATAATC 666235 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || || |||| ||| | | || || || ||||||||||| ||||||||||| | ||| Sbjct 666234 TCAGTGCATAAATTGGAAGACTTTATCGTACCCAGATTTTGCTGGTTGCTCTTCCTGTTG 666175 Query 77796 CATGAGTCCTTATAAAGAATA 77816 |||||||||| | |||||||| Sbjct 666174 CATGAGTCCTAAAAAAGAATA 666154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694562437523360