Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3309 111 2e-19 seq1104 93.3 6e-14 seq6747 87.8 3e-12 >seq3309 Length=3363706 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||| || || || | || |||||||| || ||||| ||| ||| ||| Sbjct 2883346 CTCTCTCTCATAATGGGTGTAGAGCCTCTCAAATTCCTCACCCCAGCAATCTGCCAGACC 2883405 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| |||||| || || | ||||||||||| ||||| || |||| | ||| || Sbjct 2883406 AGGAGCTTCATTAGGGCAAAACAATGACCACTGCCCATCACTCTGGACCCTCTCCATGAA 2883465 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||||| | ||| |||||| ||| || |||| || |||| ||||||| Sbjct 2883466 AAGATCAGGAACCCAAAGAGCATAAAACAGGTCTCTGGCTCTATGTTCTTC 2883516 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | | ||| |||| ||| ||| Sbjct 2883798 CCCCCTTGATCAACATAACGAGCAGTATCATTGAACACCCGAAGCATAGGAACAATACCG 2883857 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||| || ||| ||| ||||||||| |||||| ||||| || || Sbjct 2883858 TTAGATGTCCCATTCGTGCCACGAATGTAACTTCCAGTTGCACGGATATTGTGAACTGAA 2883917 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| || || || ||| || | ||||| ||||| |||||||| ||| Sbjct 2883918 ACACCTATACCACCAGCTGATTTGCTAATAACGGCACATTCTTTCAGGGTGTCATATATG 2883977 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| || || ||||| |||| Sbjct 2883978 CCCTCAATGCTGTCATCTTTCAT 2884000 >seq1104 Length=4098138 Score = 93.3 bits (102), Expect = 6e-14 Identities = 380/591 (64%), Gaps = 11/591 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || || |||||||| |||| || || ||||| || || || | Sbjct 1191358 CACGCGAAATCGCAGTGGAGGCCTTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTTAAT 1191417 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||||| || |||||||| ||||||||||| | ||| ||| | || || ||||| Sbjct 1191418 CCCGGCATTAACCCGCGCTTTTTCAGCCAAAATATCG-CGCAGAAGCTGCCGGAGAAGAA 1191476 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || ||||| || ||||| |||| |||||||| || | || | | || Sbjct 1191477 GATCCCTTCAACGCAGGCGAAGGCGATGAGTCTCTCGGCGAAGCTCTGAGACCCGTCGAT 1191536 Query 46809 CCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||| ||| | ||||| | ||||| || || ||||| || || || || || | Sbjct 1191537 CCA--TTTCATCGCCCACTGTGCCTTCTTGGCGACGCAAGGAATGGTCTCGATGGCGCGA 1191594 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || || | | || | || || | || || || | | ||||| ||||| Sbjct 1191595 AAAAGGTGGTCTCTCTCCTTCGCGTCCTTTATGTAGGTGTCGAGGAGGAGACTGTACATC 1191654 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| ||||| || || || ||||| || ||||| || | || || | | | Sbjct 1191655 TCCGAATGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAATGCACGCGCCTCCGCGACC 1191714 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || || || | ||||| ||| || || || || || Sbjct 1191715 TGAACATC-GGACATGAACCGGGAAGCGAGGTTCTCCAACACAATACCGTCGGAGGCGGC 1191773 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTCCA 47102 ||| || || | ||||| | || || | ||| || |||| || | ||| Sbjct 1191774 AAAGAAAGCGAGGACATGGGTGATGAAGTGCCGTTCGCCGTCGTTCAGGGTCTTCTCCCA 1191833 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || || ||| | || | ||| || || || || ||||| || || ||||| || || Sbjct 1191834 ATCTCGGACATCCTGCGACAGATCGACCTCCTCGGCGGTCCAAAACGAGGCCTCAGCCTT 1191893 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 || ||||| | ||| || | | || |||| ||||| || ||| ||||| Sbjct 1191894 CTTGTACATCTCCCAGATCTGAGGAAATTGAATCGGGAACATACAGAATCT 1191944 >seq6747 Length=1176643 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||| ||||| ||||| |||| | |||||||| || ||||| ||| ||||||| Sbjct 665902 CTCTCTCTCATAATGTGTGTATAGTCTCTCAAATTCCTCACCCCAGCAATCTGCCAAACC 665843 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| |||| | || || | |||||||||| ||||| | ||||| | ||| || Sbjct 665842 AGGAGCTTCACTGGGGCAAAACAATGACCACAGCCCATCAGTTTGAACCCTCTCCATGAA 665783 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||||| | ||| || ||| || || || | | ||| ||||||| Sbjct 665782 AAGATCAGGAACCCAAAGCGCATAGAACAGGTCCCTAGCCCTATGTTCTTC 665732 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76273 AGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTC 76332 ||| |||||||| ||||| ||||| || || ||| | | || | || ||||| Sbjct 666292 AGCAATAGATGCAAGATTGCAAACAGCAGTTTCCGTAGGGCTAGTGTACTCAATAATCTC 666233 Query 76333 CGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA 76392 ||||||| ||| | |||| || || || |||||||| ||||||||||| |||| || Sbjct 666232 AGTGCATAAATTGGAAGACTTTATCGTACCCAGATTTTGCTGGTTGCTCTTCCTGTTGCA 666173 Query 76393 TGAGTCCTTATAAAGAA 76409 |||||||| | |||||| Sbjct 666172 TGAGTCCTAAAAAAGAA 666156 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || ||||| ||||||||||||||| | | || | | || | Sbjct 665112 GTTCCTGCATTGAAGAGAGTGGGAGAAGCATGAGTGAACCATCTCTGGGACATCAAATGG 665053 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || ||| || | | || ||||| | ||| || || |||||||| || | ||||| Sbjct 665052 TACGTTCTGATTGCAGAATCGATATCATCCTTG-TGGATGCCTACAGCAACTCTCATCAG 664994 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| ||| | | ||| | | ||| ||| | || | Sbjct 664993 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGGACTTTAAGGAGGTAGGATCTCTCAAG 664934 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| |||| ||| ||| || | ||||| || || Sbjct 664933 TGTTTTAAATCCAAAGTAGTCATATTCAAAATCACGATCGTAGATTAT 664886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712825240831680