Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9362 82.4 9e-11 seq4833 82.4 9e-11 >seq9362 Length=5148269 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 161546 GACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGT 161605 || || |||||||| || ||||| || ||||| || || || || | |||||| || Sbjct 706909 GAGGATCAGTACATCCTGGACGCGGCCGAGGAGGCAGGGGTCGAGCTGCCCTACTCTTGC 706850 Query 161606 CGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 161665 || || ||||||||||| | || || || || ||| |||||| | || ||||| | Sbjct 706849 CGGGCCGGCGCTTGTTCCACCTGTGCCGGGAAGATCGAGTCTGGCGCTGTCGACCAGTCC 706790 Query 161666 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 161725 ||| || || || ||||| || | |||| |||| | | || || || ||||| Sbjct 706789 GACGGCTCGTTTCTCGACGACGATCTCATCGGAAAAGGTTACGTCCTTACCTGCGTTTCG 706730 Query 161726 TATCCCACGAGCGATTGTGTGAT 161748 ||||| | ||| |||||||| Sbjct 706729 TATCCTCAGTCCGACTGTGTGAT 706707 >seq4833 Length=3074427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | || |||||||| ||||| ||||| | || | || Sbjct 2717490 GTGCGACGACGACGTCTACGTCCTCGACGCAGCGGAGGAGGCGGGGCTCGATCTGCCGTA 2717549 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 |||||| || || || | || ||| ||||| || ||| | || | || |||| || Sbjct 2717550 CTCGTGCCGCGCCGGTTCGTGCTCGAGCTGCGCCGGGAAAGTGGTGACGGGATCCGTGGA 2717609 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| |||| ||||||||||||| |||| || | | || ||||| Sbjct 2717610 CCAGTCTGACCAGAGCTTCTTGGACGATGACCAGATCGGGGAAGGGTATGTCCTCACTTG 2717669 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGA 161766 |||| |||| || || ||| |||||| |||| | ||||||| Sbjct 2717670 TGTTGCTTACCCAACTTCTGATGTCGTGATTCAGACCCACCAAGAAGA 2717717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557569016140680