Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq5510 87.8 2e-12 >seq5510 Length=2415207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 176163 GACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGC 176222 || |||||||| || |||||||| || ||||| |||||||| || || |||||| ||| Sbjct 935668 GAGGATCAGTACATACTGGATGCAGCAGAGGAGGCAGGAGTCGAGCTGCCCTACTCTTGC 935609 Query 176223 CGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGC 176282 | ||||| || ||||| | ||||| || || || || ||||| || || ||| Sbjct 935608 AGGGCTGGCGCATGTTCCACCTGTGCCGGGAAGCTAGCGTCAGGCACTGTCGACCAATCT 935549 Query 176283 GATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCA 176342 || ||||||||||| || | | || || ||||| | ||||| ||||| | Sbjct 935548 GACGGCTCGTTCCTTGACGACAATCTCATTGAACAAGGTTATGTCCTGACCTGTGTGGCT 935489 Query 176343 TATCCTACGAGCGATTGTGTGAT 176365 ||||| ||| |||||||| Sbjct 935488 TATCCCCAATCCGACTGTGTGAT 935466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596215897913840