Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 122 2e-22 seq10 105 1e-17 seq6 105 1e-17 seq3 105 1e-17 seq1 105 1e-17 seq9 104 5e-17 seq8 104 5e-17 seq5 104 5e-17 seq2 104 5e-17 >seq4 Length=31929104 Score = 122 bits (134), Expect = 2e-22 Identities = 548/857 (64%), Gaps = 25/857 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| |||||||| || || | ||||| ||||||||||| || | || | || || Sbjct 2301479 GTTCCCGATCCAATACCCGGAAGTATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTG 2301538 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTC--AAT 229875 |||| | |||||||| ||| | || | | ||||| ||||||| | Sbjct 2301539 GACCGCCGAGGAAGTCGATCTCTCGTCGGATCTACGCCACTGG-----GAAACTCTTACC 2301593 Query 229876 GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATT 229935 || | |||||| || ||||||| ||| |||| | || ||||||| ||||||||| || Sbjct 2301594 GATGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATC 2301653 Query 229936 GTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 || | |||||||| || | | || | |||||| | | ||||| || Sbjct 2301654 GTCCTCGAAAATCTCGCCGTTCGG-TTCATGAAGGAAGTCCAAATCGCCGAGGCTCGTGC 2301712 Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054 || |||| | ||||| || |||| |||||| || || ||| ||| || | Sbjct 2301713 GTTCTATGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCT 2301772 Query 230055 CGACGCGCTTATTTCC--GACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAAC 230112 || | ||| || ||| | ||| |||| ||| || | ||| | |||| Sbjct 2301773 TGAAAC--TTACATCAAGGACTCCAACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACA 2301830 Query 230113 ATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCG 230172 | ||| || ||| || || ||||||| ||||||| | || | || | Sbjct 2301831 GTGCCGTGTGTGGCTAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGGTTCGGAAACT 2301890 Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || ||||| || || |||| | | || || ||||| ||| | || || || |||||| Sbjct 2301891 TTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTC 2301950 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 ||||| || |||||| | || |||| | | |||||||| | | | || || Sbjct 2301951 TGCGCTATATTTTGGTT----AAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAA 2302006 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAA 230347 |||||| ||| || || || ||||||||| | |||| | |||| |||| || Sbjct 2302007 CGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCG-CTTGCTTGCTGTACTCCC 2302065 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 |||| | ||||| ||| || | | | | | || ||||| || | Sbjct 2302066 TCCTCCGGTCAAAGCTGAGCGAAGAGCGCGTGAGAGGGTTAGTGAGGGACGCAGTGGATA 2302125 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAA 230466 || | |||||| | ||||| ||| | || || ||| || |||| ||||||| || Sbjct 2302126 TAGAGAGGGAGTTTGTATGTGATGCTCTGCCGTG-CGCATTGGTTGGGATGAACGGAGAG 2302184 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| || || || | || | || | || |||| | Sbjct 2302185 CTGATGAGTCAGTACATCGAGTTCGTCGCAGATCGGTTGTTGGGAGCGTTGGGGTACGGG 2302244 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || ||||||| ||||| |||| | ||||| || |||||| | ||||| || Sbjct 2302245 AAGATGTACAATGTGGCTAACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGTAAA 2302304 Query 230587 ACCAACTTCTTCGAAAA 230603 || || |||||||| || Sbjct 2302305 ACTAATTTCTTCGAGAA 2302321 >seq10 Length=21822658 Score = 105 bits (116), Expect = 1e-17 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| | ||||||||||||||||||||||||||| || || |||| || ||||||||| Sbjct 563807 AAAACCGTAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 563866 Query 165761 GGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||| ||||| Sbjct 563867 GGTTCGAGCCCCACGGTGGGC 563887 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2078053 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2077994 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2077993 CCCACGGTGGGC 2077982 >seq6 Length=26303135 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 18077686 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 18077627 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 18077626 CCCCACGGTGGGC 18077614 >seq3 Length=36364294 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 33287201 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33287142 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 33287141 CCCCACGGTGGGC 33287129 >seq1 Length=37323695 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 35002368 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 35002309 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 35002308 CCCCACGGTGGGC 35002296 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 35404880 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35404939 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35404940 CCCACGGTGGGC 35404951 >seq9 Length=38630433 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 32001298 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32001357 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32001358 CCCACGGTGGGC 32001369 >seq8 Length=19593398 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4435588 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4435529 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4435528 CCCACGGTGGGC 4435517 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||||| |||||||| || || |||| || | |||||||||||||| | Sbjct 5377149 GCCTGTCTAGCTCAGTCGATAGAGCGCAAGGCTCTTAACCTTGAGGTCGTGGGTTCGAAC 5377090 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5377089 CCCACGGTGGGC 5377078 >seq5 Length=39371879 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1100498 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1100557 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1100558 CCCACGGTGGGC 1100569 >seq2 Length=41236440 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 34684580 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34684521 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34684520 CCCACGGTGGGC 34684509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818158497530