Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 >seq4 Length=31929104 Score = 143 bits (158), Expect = 3e-29 Identities = 385/584 (66%), Gaps = 5/584 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||||||||| | || || |||| ||| | ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || || ||||| || || || |||||||||||||| ||| ||| |||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAG 2301940 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || || ||| | ||||| ||||||| ||||||||| | || | Sbjct 2301939 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 2301880 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| | ||||||||||||| | | || || ||||| | Sbjct 2301879 CGT--CG-ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGA 2301823 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 ||| | || | | ||||| | ||| | || || || || | ||| || | Sbjct 2301822 CGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGAC 2301763 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCT 17314 | ||||| |||||||| || || || ||||| || || || || || || ||| || || Sbjct 2301762 TATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCC 2301704 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || || ||||| |||||| ||| || | || ||||||||| |||||||| ||| Sbjct 2301703 TCGGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCG 2301644 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || ||||| || || | | || | ||||| | |||| | |||||| Sbjct 2301643 GAGGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTT 2301584 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| || ||| || | ||| ||||| |||| ||||||||| || | Sbjct 2301583 TCCCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCG 2301524 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || || ||||| | ||| | || |||||| || ||||| Sbjct 2301523 GCTTTCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAA 2301480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542811723080