Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 125 7e-24 >seq4 Length=31929104 Score = 125 bits (138), Expect = 7e-24 Identities = 381/580 (66%), Gaps = 14/580 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| |||||||| || ||||| |||| ||| | ||||| || |||||||| Sbjct 2302051 CAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAAT 2301992 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 || |||||| || || || |||||||| ||||| ||||| || | || || |||| Sbjct 2301991 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTT--CCAGAGAAGA 2301934 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATT 16377 | || || || || | ||||||||||||| ||||| ||| | || | | | | Sbjct 2301933 AAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGT--- 2301877 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || ||||||||| |||| |||||||| | | ||| || ||||| | ||| Sbjct 2301876 -CG-ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGC 2301819 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | ||||| | || | || || || |||| || | ||| || Sbjct 2301818 GTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATA 2301759 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCG 16556 ||| || ||||| || || || ||||| || || || |||||||| ||| |||||||| | Sbjct 2301758 CATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCCTCGG 2301700 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | ||||| |||||| || || | || || || || ||||| || || | Sbjct 2301699 CGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGG 2301640 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || || || || | | ||| | ||||| | |||| || |||||| | | || Sbjct 2301639 CTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTCCC 2301580 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | || ||| || | ||| ||||| || | ||||||||| || | || | Sbjct 2301579 AGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTT 2301520 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAA 16775 | || ||||||| ||| | || |||||| || ||||| Sbjct 2301519 TCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAA 2301480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411644754920