Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 >seq2 Length=41236440 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || || |||| ||| ||||||||||||||||| || || Sbjct 4019279 ACATGAGCAATCATGCATGTCAAGAGAGCATAAGATGCAATGTTAAATGGCACGCCCAAT 4019220 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||| ||||| || | ||||||| |||||| || Sbjct 4019219 CCCATGTCAGCAGAGCGCTGATACATTTGACATGA 4019185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249302415181