Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq1 89.7 6e-13 seq8 82.4 9e-11 >seq4 Length=31929104 Score = 147 bits (162), Expect = 3e-30 Identities = 261/377 (69%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || ||||||||||| || ||||| || |||| ||||| ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || |||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCCA 2301941 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA---CCGGCG 24302 || |||||||| ||||| || ||||| || || || | ||| | || | | Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 2301881 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| || ||||| ||||| ||||| ||||| |||| ||| || Sbjct 2301880 CCGTC---GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCG 2301824 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | || | ||||| ||| ||||| || || || | || || |||| | ||| Sbjct 2301823 ACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGA 2301764 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 |||||||| || || || || ||||| ||||| ||||| || || ||||| | |||| Sbjct 2301763 CTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCC 2301704 Query 24483 TCGGTAATCTGTACTTC 24499 |||| || || ||||| Sbjct 2301703 TCGGCGATTTGGACTTC 2301687 >seq1 Length=37323695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 6395078 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 6395137 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| |||||| || || ||||| || || |||| |||||||| || || Sbjct 6395138 ATTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGA 6395197 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| ||||| || || ||| || | || || || || |||||||| || Sbjct 6395198 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 6395257 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 6395258 TCCTTCAATACTATCATCTTTCAT 6395281 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| ||||| ||||| | | ||| | | ||||| | |||||| | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||| ||||| || | || |||||| || || || || || Sbjct 6395602 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 6395648 >seq8 Length=19593398 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 53930 TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 53989 || ||| | |||||||||| || |||||| || |||||| || | | ||| || | Sbjct 16108495 TCATATTGGGTATACAATCTTTTAAACTCTTCGCCCCAACAATCAGCTAGACCATGAGCT 16108436 Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 ||| ||||| | ||| ||||| | ||| ||| | | || | || ||| || || ||| Sbjct 16108435 TCAGAAGGACAGAACAAGGACCATTTTCCATCACCTTGAACCCTTTCCATGAAAAGGTCA 16108376 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTC 54077 |||| ||||||||| ||||||||||| Sbjct 16108375 GGAACCCAAAGAGCCTAAAATAGATCTC 16108348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718401324880