Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq6 95.1 1e-14 seq5 86.0 5e-12 >seq1 Length=37323695 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| | || ||| || ||||| || |||||||| ||||| || || ||| Sbjct 11148331 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTTGAA 11148390 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | || || || ||||| || ||||||||||| |||||| ||||||| Sbjct 11148391 GATGGAAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 11148450 Query 29175 CGATTACGAGGAGGG 29189 || ||||| || ||| Sbjct 11148451 CGTTTACGTGGTGGG 11148465 >seq6 Length=26303135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || |||| || ||||||||||| || ||| | | Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| ||| || || ||||| | || |||||| Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 25054452 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || ||| |||||||| | ||| |||| ||||||||| Sbjct 25054453 CAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAAT 25054512 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || || |||||| |||| || || Sbjct 25054513 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 25054547 >seq5 Length=39371879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| || ||||| || ||||| || ||| || |||| | Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||||||||| || || ||| |||| ||| | ||| | || ||||| || Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || ||||| || ||| Sbjct 2688249 CATTCAGAAAGAGTCTACCCTCCAC 2688225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333750031305