Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq6 91.5 1e-13 seq5 91.5 1e-13 >seq1 Length=37323695 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || ||||| || |||||||| ||||| || | ||| Sbjct 11148331 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTTGAA 11148390 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || || || ||||| |||||||||||||| |||||| ||||||| Sbjct 11148391 GATGGAAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 11148450 Query 25248 CGATTACGAGGAGGG 25262 || ||||| || ||| Sbjct 11148451 CGTTTACGTGGTGGG 11148465 >seq6 Length=26303135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || |||| || ||||||||||| || ||| | | Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||| ||| || || ||||| | || |||||| Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 25054452 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || |||||||||||| | ||| |||| ||||||||| Sbjct 25054453 CAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAAT 25054512 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| || || |||||| |||| || || Sbjct 25054513 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 25054547 >seq5 Length=39371879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || |||| || ||||| || ||||| || ||| || |||| | Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| || || |||||||| ||| | ||| | || ||||| || Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| || ||| Sbjct 2688249 CATTCAGAAAGAGTCTACCCTCCAC 2688225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| ||||| ||||||||||| ||| |||| || | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| ||||| || |||||||| | || || ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || ||||| || || ||||| |||| || | ||| |||| ||||| ||| Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAT 2688705 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || |||||||| || ||||| ||| Sbjct 2688704 ATCCAAAAGGAGTCGACTCTCCAC 2688681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410794642161434