Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-28 seq7 118 2e-21 seq5 109 8e-19 seq9 95.1 2e-14 seq6 93.3 6e-14 >seq1 Length=37323695 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | |||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 11147782 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTC- 11147840 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| || ||||| || || |||||||| Sbjct 11147841 TGATACTATTGACAATGTTAAAGCGAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 11147900 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||| ||||| || ||||| | || || |||| || ||| || ||||| Sbjct 11147901 ACAAAGACTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTATAA 11147960 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | |||||||| | ||| | |||||||| || Sbjct 11147961 TATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGTCTTCGAGGTGGCAT 11148011 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || ||||||||||| || || || | ||| |||| ||| Sbjct 11147554 ATGCAAATCTTTGTGAAAACCCTAACAGGCAAGACCATCACCCTTGAGGTTGAGAGC-TC 11147612 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || ||||| || ||||| || || ||||| || Sbjct 11147613 TGATACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCA 11147672 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||||||||| || ||||| | || ||| ||||||| ||| || ||||| Sbjct 11147673 GCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGTCGAACCCTAGCTGACTATAA 11147732 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | |||||||| | ||| | || |||||||| Sbjct 11147733 TATCCAGAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGTAT 11147783 >seq7 Length=21614486 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | || || | || || ||||| || ||| | ||| | || ||| Sbjct 2883015 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2882956 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| |||||| || | ||| || || |||||||| || ||||| |||||||| | Sbjct 2882955 -TGACACAATTGACAACGTTAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 2882897 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||| | |||||||| ||||| || | |||||| | | ||| | | ||| |||| Sbjct 2882896 AACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTTGCAGACTATA 2882837 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| || ||||| ||||||||||||| || Sbjct 2882836 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCG 2882800 >seq5 Length=39371879 Score = 109 bits (120), Expect = 8e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || ||||| || || | ||| | ||| Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| |||| | || || ||||| ||||| ||||| || || || ||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || ||||| |||||| | | || |||| |||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| ||||| || || Sbjct 2688249 CATTCAGAAAGAGTCTAC 2688232 >seq9 Length=38630433 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | ||| | || | Sbjct 27803720 ATGCAGATCTTCGTGAAGACGCTGACTGGAAAGACGATTACGCTTGAGGTGGAGAGTTCT 27803779 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | || ||||||||||||||| || || || ||||||||||| Sbjct 27803780 GATACAATCGATAACGTGAAGGCGAAAATTCAAGATAAGGAGGGGATTCCACCTGATCAG 27803839 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||| || || || ||||| |||||| | || || | | |||||| || Sbjct 27803840 CAGAGGCTCATTTTCGCTGGGAAGCAATTGGAGGATGGGCGTACTCTTGCAGATTACAAC 27803899 Query 124719 ATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 27803900 ATCCAGAAGGAGTCTAC 27803916 >seq6 Length=26303135 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || || || ||||| || || || || || ||||||||||| ||||| || || Sbjct 25054189 AAGATCCAGGACAAGGAAGGAATCCCGCCAGACCAGCAAAGGCTTATCTTTGCTGGGAAG 25054248 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| ||||||| || | |||||||| ||||| ||||| || || | ||| Sbjct 25054249 CAGCTCGAGGACGGTCGAACTTTGGCTGATTATAACATTCAGAAAGAGTCGACACTTCAT 25054308 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| | | || ||||| || Sbjct 25054309 TTGGTTTTGAGGCTCCGTGGTGGGAT 25054334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451929980800