Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9 122 6e-23 seq2 107 1e-18 seq5 102 5e-17 seq7 91.5 1e-13 seq1 89.7 3e-13 seq6 82.4 5e-11 >seq9 Length=38630433 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||||||| ||||| ||||| | || ||| ||||| || |||||||| | | Sbjct 27803490 CCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCCGCC 27803431 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || | ||||| ||||| || Sbjct 27803430 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGG 27803371 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | |||||| Sbjct 27803370 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACT 27803311 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 27803310 TCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 27803264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | ||| ||| || || || ||||| || | Sbjct 27803262 CCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCA 27803203 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| || | ||||| || || || Sbjct 27803202 AGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGA 27803143 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || Sbjct 27803142 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 27803083 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||||||||| || |||||||| |||||||||||| Sbjct 27803082 TCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 27803035 >seq2 Length=41236440 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||||| || | || || ||||| ||||| ||||||| Sbjct 32406482 CCACCGCGGAGGCGGAGGACCAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCT 32406541 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||||||||| ||||| ||||| || || ||||| || Sbjct 32406542 AGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGG 32406601 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | |||| |||||||| Sbjct 32406602 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACC 32406661 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || |||||||| ||||||||||| Sbjct 32406662 TCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 32406708 >seq5 Length=39371879 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || ||||| | ||| || || || || || || || | | Sbjct 2688658 CCTCCACGGAGCCTGAGGACAAGGTGGAGAGTCGACTCCTTTTGGATATTATAATCAGCC 2688717 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| |||| ||| || || ||||| ||||||||||| |||||| || Sbjct 2688718 AAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGG 2688777 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || ||||| ||| | | | | |||| |||| |||| Sbjct 2688778 ATGCCTTCTTTGTC--CTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGA 2688835 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||||||||| | |||||| |||||||| ||||| Sbjct 2688836 CTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCAT 2688884 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | ||| || ||||| |||||||| || | | Sbjct 2689114 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCC 2689173 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCT-GCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | |||| |||| || | ||| ||||| ||||| ||||||| ||||||||| || Sbjct 2689174 AAGGTACGGCCGTCTTCGAGCTGTTTGCCACGCGAAGATGAGCCTTTGCTGGTCGGGTGG 2689233 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 2689234 GATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGAC 2689293 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| |||||||| || |||||||| |||||||||||| Sbjct 2689294 CTCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATC 2689342 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | ||| || ||||| ||||| || || | | Sbjct 2688886 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCC 2688945 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | ||| || || ||||| ||||||| ||||||||| || Sbjct 2688946 AAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGG 2689005 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | |||| |||| || || Sbjct 2689006 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACT 2689065 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| ||||| | ||||| || ||||||||||| Sbjct 2689066 TCGAGGGTGATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCAT 2689112 >seq7 Length=21614486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| | ||| || | || |||||||||||||| || || Sbjct 2882596 TCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAG 2882655 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| || | | ||||||||| ||| |||||||| | || Sbjct 2882656 ATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATC-TTTGCTTTCACATT 2882714 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | || || |||| ||||||||||| || || | || ||||| Sbjct 2882715 GTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTCAC 2882774 Query 34378 AAAGATCTGCATCGCTC 34394 ||| ||||||||| ||| Sbjct 2882775 AAATATCTGCATCCCTC 2882791 >seq1 Length=37323695 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| || |||||||||| | | || ||| |||| || | ||||||||| |||| Sbjct 32435723 TTCCTTCTGAATATTGTAGTCGGCTAAGGTG-CGGCCGTCTTCGAGCTGCTTGCCGGCGA 32435781 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 | ||||| || ||||| || || | | |||||||| ||||| ||||| | | Sbjct 32435782 AGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTG-GCTTTGACA 32435840 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | || | |||||||| || | || ||||| || || || || ||||| Sbjct 32435841 TTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTG 32435900 Query 34376 ACAAAGATCTGCATC 34390 || |||||||||||| Sbjct 32435901 ACGAAGATCTGCATC 32435915 >seq6 Length=26303135 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 25054088 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCGTCC 25054029 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || || || |||| || ||||| | ||| | || |||||||| Sbjct 25054028 TCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGTTGGTCCGGTGGGATCCCT-TCCTTGTC 25053970 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | |||| |||| ||||| || | ||||| || Sbjct 25053969 CTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATTGT 25053910 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || || |||||||||||| Sbjct 25053909 CTTGCCGGTGAGTGTCTTAACGAAGATCTGCATC 25053876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070302963360