Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 >seq4 Length=31929104 Score = 109 bits (120), Expect = 5e-19 Identities = 364/562 (65%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| ||||| || || ||||||| || | ||||| || || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||||||||||||||| || ||| ||| || ||| Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAG 2301935 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || || || |||||| || |||| ||||| | || | | | | || Sbjct 2301934 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-TC 2301876 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||| || | ||| || | | | || |||||| | || Sbjct 2301875 G--ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCG 2301818 Query 14441 TTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | || | | | ||| || || ||| |||| ||||| || |||| || | |||| Sbjct 2301817 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 2301760 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||| || ||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 2301759 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 2301700 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 ||| || || || | |||| | |||||| || || ||||| | Sbjct 2301699 CGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGG 2301640 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 |||| || || || | | || | || |||| | || ||| | | || ||| || Sbjct 2301639 CTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTCCC 2301580 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 | | | || |||| || ||||| ||||| || | |||||||| || | |||| Sbjct 2301579 AGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTT 2301520 Query 14739 TTTTATACATTACCCATATTTC 14760 | || |||||| |||||| ||| Sbjct 2301519 TCTTGTACATTTCCCATACTTC 2301498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||| || Sbjct 27278579 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAA 27278520 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 14300 |||||||||| ||| | ||||| | ||| || |||| Sbjct 27278519 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTG 27278483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343001363080