Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq5 102 7e-17 seq2 98.7 9e-16 seq1 95.1 1e-14 seq9 93.3 4e-14 seq7 82.4 7e-11 >seq6 Length=26303135 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || ||||| ||| | || || ||| ||| Sbjct 25054105 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATAACCCTGGAAGTCGAAAGCTCC 25054164 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | ||||| |||||| Sbjct 25054165 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCAGACCAG 25054224 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || ||| | || ||| | ||| || ||||||||| Sbjct 25054225 CAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 25054284 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| |||||| |||| Sbjct 25054285 ATTCAGAAAGAGTCGACACTTCATTTGGT 25054313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||||||||| ||||| || || | || || || || Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || || | | | || || || |||||||||||| | || || || || Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAG-ATTCAGGACAAGGAAGGGATTCCACCAGATCA 25054451 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | ||||| ||||| || || |||||||| | |||| || ||||| || Sbjct 25054452 GCAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAA 25054511 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || ||||| ||||| Sbjct 25054512 TATTCAGAAGGAGTCCACCCTTCACCTGGT 25054541 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 25053874 AAGATGCAGATCTTCGTTAAGACACTCACCGGCAAGACAATCACCCTCGAAGTCGAGAGT 25053933 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||||||| | || || ||| Sbjct 25053934 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGAC 25053993 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || || || ||||| || ||| | || ||| || || |||||| Sbjct 25053994 CAACAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCCGAACCTTGGCCGATTAC 25054053 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || || || || Sbjct 25054054 AACATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 25054088 >seq5 Length=39371879 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| || ||||| |||||| |||| || || ||| Sbjct 2689112 ATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATCACCCTCGAAGTGGAGAGTTCC 2689053 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||| | || ||||||||| Sbjct 2689052 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAG 2688993 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || |||||| | |||||| | || || ||||||||| Sbjct 2688992 CAAAGGCTCATCTTCGCCGGGAAACAGCTCGAAGACGGTCGTACCTTGGCGGATTATAAC 2688933 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || ||||| || | || | ||||||| Sbjct 2688932 ATCCAGAAGGAGTCAACTCTCCACCTGGTCCTCCGTCTTCGTGGCGGTA 2688884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || ||||| ||||| || || || |||| || || Sbjct 2689344 AAGATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATAACTCTCGAGGTCGAGAGT 2689285 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| |||| | | | ||| | ||||||||||| | || ||||| Sbjct 2689284 TCCGACACCATCGACAACGTTAAGGCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGA 2689226 Query 31309 CCAGCAGCGTCTAATATTCGC-TGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||| | || || ||||| |||||||||| | |||||| || || |||| Sbjct 2689225 CCAGCAAAGGCTCATCTTCGCGTGGCAAACAGCTCGAAGACGGCCGTACCTTGGCGGATT 2689166 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || |||||||| || ||||| || | || | ||||||| Sbjct 2689165 ACAACATCCAGAAGGAGTCGACTCTCCACCTGGTCCTCCGTCTTCGTGGCGGTA 2689112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || ||||| |||||| | || || ||| || Sbjct 2688428 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTCG 2688369 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | ||| |||||||| | || || || || Sbjct 2688368 GATACAATCGATAATGTCAAGGCAAAGATTCA-GGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || || || || || || ||||| || | |||| | ||| ||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTT-AGCTGATTATA 2688251 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||| ||||| || || || || || || ||| Sbjct 2688250 ACATTCAGAAAGAGTCTACCCTCCACCTTGTCCTT 2688216 >seq2 Length=41236440 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || || ||| | || || ||| Sbjct 32406713 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAAT 32406654 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || |||||||||||| | || || | Sbjct 32406653 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGG 32406594 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || ||||| || ||||| ||||| ||| | |||||| || | ||| | Sbjct 32406593 ACCAACAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTAGCCGACT 32406534 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||| || || || || || |||||||| || Sbjct 32406533 ATAACATTCAGAAGGAGTCCACCCTCCATCTGGTCCT 32406497 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || || ||| | || || ||| Sbjct 32435919 CAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAAT 32435860 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | |||||| | || |||||||||||| | || || | Sbjct 32435859 CCTCTGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCGG 32435800 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||| ||||| || ||||| ||||| ||| | |||||| || | ||| | Sbjct 32435799 ATCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTAGCCGACT 32435740 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || ||||| || ||||| || || || | || ||||| || Sbjct 32435739 ACAATATTCAGAAGGAATCCACCCTTCACCTCGTCCTCCGTCTCAGGGGTGG 32435688 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || ||||| || || |||||| | || ||||| || Sbjct 11147782 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 11147841 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||||||||| | || || || || Sbjct 11147842 GATACTATTGACAATGTTAAAGCGAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCAA 11147901 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || || |||||||||||| | |||||| | || | ||| || ||||| Sbjct 11147902 CAAAGACTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCT-AGCTGACTATAA 11147960 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || |||||| |||| ||| Sbjct 11147961 TATCCAGAAGGAGTCCACCCTTCATTTGGTGCTT 11147994 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| ||||| ||||||||||| | || || || || Sbjct 11148009 CATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTC 11148068 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| | || ||| || || || | || || || || Sbjct 11148069 GGACACTATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 11148128 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| ||||| | ||||| | ||| | |||||||| Sbjct 11148129 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 11148188 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || || || ||||| |||| || Sbjct 11148189 CATTCAAAAGGAGTCAACCCTTCACTTGGTTCT 11148221 >seq9 Length=38630433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || |||||||| |||||| |||| || || Sbjct 27803033 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 27803092 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||||||||| | || || || Sbjct 27803093 TCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGAT 27803152 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATT 31367 || ||||| | || ||||| ||||| || | |||||| | | || || | |||| Sbjct 27803153 CAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCT-TGCG-GATT 27803210 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | || || ||||| ||||||||||| || |||||||| Sbjct 27803211 ACAATATCCAAAAGGAATCGACTCTCCACCTGGTACT 27803247 >seq7 Length=21614486 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || |||||| | | || || |||||||||||| | || Sbjct 12529261 GGACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGA 12529320 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| | ||||||||||| ||||| || ||||||||||| |||| | Sbjct 12529321 AGATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTT 12529380 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 12529381 GAGGCTTAGGGGAGG 12529395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || |||||| | | || || |||||||||||| | || Sbjct 12547887 GGACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGA 12547946 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| | ||||||||||| ||||| || ||||||||||| |||| | Sbjct 12547947 AGATGGTTGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTT 12548006 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 12548007 GAGGCTTAGGGGAGG 12548021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763998433520